経歴
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2022年04月-継続中
早稲田大学 理工学術院総合研究所 次席研究員 研究院講師
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2019年01月-2022年03月
特定国立研究開発法人理化学研究所 革新知能統合研究センター
2024/12/01 更新
早稲田大学 理工学術院総合研究所 次席研究員 研究院講師
特定国立研究開発法人理化学研究所 革新知能統合研究センター
Computational Design of Synthetic Optical Barcodes in Microdroplets
Fumiko Kawasaki, Takahiro Mimori, Yuka Mori, Hiroyuki Aburatani, Nozomu Yachie, Issei Sato, Sadao Ota
Advanced Optical Materials 2023年12月
Analysis of Genetic Polymorphism of Bitter Taste Receptor <i>TAS2R38</i> and<i> TAS2R46</i>, and Its Relationship with Eating and Drinking Habits in Japanese ToMMo Subjects
Michiko YAMAKI, Hiroki SAITO, Takahiro MIMORI, Yoichi SUZUKI, Masao NAGASAKI, Kichiya SUZUKI, Shizuko SATOH-KURIWADA, Noriaki SHOJI, Kunio ISONO, Tomoko GOTO, Hitoshi SHIRAKAWA, Michio KOMAI
Journal of Nutritional Science and Vitaminology 2023年10月
GeoPhy: Differentiable Phylogenetic Inference via Geometric Gradients of Tree Topologies.
Takahiro Mimori, Michiaki Hamada
Advances in Neural Information Processing Systems 36 36591 - 36619 2023年 [査読有り] [国際誌]
担当区分:筆頭著者, 責任著者
dbTMM: an integrated database of large-scale cohort, genome and clinical data for the Tohoku Medical Megabank Project
Soichi Ogishima, Satoshi Nagaie, Satoshi Mizuno, Ryosuke Ishiwata, Keita Iida, Kazuro Shimokawa, Takako Takai-Igarashi, Naoki Nakamura, Sachiko Nagase, Tomohiro Nakamura, Naho Tsuchiya, Naoki Nakaya, Keiko Murakami, Fumihiko Ueno, Tomomi Onuma, Mami Ishikuro, Taku Obara, Shunji Mugikura, Hiroaki Tomita, Akira Uruno, Tomoko Kobayashi, Akito Tsuboi, Shu Tadaka, Fumiki Katsuoka, Akira Narita, Mika Sakurai, Satoshi Makino, Gen Tamiya, Yuichi Aoki, Ritsuko Shimizu, Ikuko N. Motoike, Seizo Koshiba, Naoko Minegishi, Kazuki Kumada, Takahiro Nobukuni, Kichiya Suzuki, Inaho Danjoh, Fuji Nagami, Kozo Tanno, Hideki Ohmomo, Koichi Asahi, Atsushi Shimizu, Atsushi Hozawa, Shinichi Kuriyama, Masayuki Yamamoto, Michiaki Abe, Yayoi Aizawa, Yuichi Aoki, Koichi Chida, Inaho Danjoh, Shinichi Egawa, Ai Eto, Takamitsu Funayama, Nobuo Fuse, Yohei Hamanaka, Yuki Harada, Hiroaki Hashizume, Shinichi Higuchi, Sachiko Hirano, Takumi Hirata, Masahiro Hiratsuka, Atsushi Hozawa, Kazuhiko Igarashi, Jin Inoue, Noriko Ishida, Naoto Ishii, Tadashi Ishii, Mami Ishikuro, Kiyoshi Ito, Sadayoshi Ito, Maiko Kageyama, Fumiki Katsuoka, Hiroshi Kawame, Junko Kawashima, Masahiro Kikuya, Kengo Kinoshita, Kazuyuki Kitatani, Tomomi Kiyama, Hideyasu Kiyomoto, Tomoko Kobayashi, Eiichi Kodama, Mana Kogure, Kaname Kojima, Sachie Koreeda, Seizo Koshiba, Shihoko Koyama, Hisaaki Kudo, Kazuki Kumada, Shigeo Kure, Miho Kuriki, Shinichi Kuriyama, Yoko Kuroki, Norihide Maikusa, Satoshi Makino, Hiroko Matsubara, Hiroyuki Matsui, Hirohito Metoki, Takahiro Mimori, Naoko Minegishi, Kazuharu Misawa
Human Genome Variation 8 ( 1 ) 2021年12月
Diagnostic Uncertainty Calibration: Towards Reliable Machine Predictions in Medical Domain.
Takahiro Mimori, Keiko Sasada, Hirotaka Matsui, Issei Sato
International Conference on Artificial Intelligence and Statistics, AISTATS 2021 3664 - 3672 2021年 [査読有り]
担当区分:筆頭著者
CD45+CD326+ Cells are Predictive of Poor Prognosis in Non-Small Cell Lung Cancer Patients.
Kota Ishizawa, Mie Yamanaka, Yuriko Saiki, Eisaku Miyauchi, Shinichi Fukushige, Tetsuya Akaishi, Atsuko Asao, Takahiro Mimori, Ryota Saito, Yutaka Tojo, Riu Yamashita, Michiaki Abe, Akira Sakurada, Nhu-An Pham, Ming Li, Yoshinori Okada, Tadashi Ishii, Naoto Ishii, Seiichi Kobayashi, Masao Nagasaki, Masakazu Ichinose, Ming-Sound Tsao, Akira Horii
Clinical cancer research : an official journal of the American Association for Cancer Research 25 ( 22 ) 6756 - 6763 2019年11月 [国際誌]
Construction of full-length Japanese reference panel of class I HLA genes with single-molecule, real-time sequencing.
Takahiro Mimori, Jun Yasuda, Yoko Kuroki, Tomoko F Shibata, Fumiki Katsuoka, Sakae Saito, Naoki Nariai, Akira Ono, Naomi Nakai-Inagaki, Kazuharu Misawa, Keiko Tateno, Yosuke Kawai, Nobuo Fuse, Atsushi Hozawa, Shinichi Kuriyama, Junichi Sugawara, Naoko Minegishi, Kichiya Suzuki, Kengo Kinoshita, Masao Nagasaki, Masayuki Yamamoto
The pharmacogenomics journal 19 ( 2 ) 136 - 146 2019年04月 [国際誌]
Maternity Log study: a longitudinal lifelog monitoring and multiomics analysis for the early prediction of complicated pregnancy.
Junichi Sugawara, Daisuke Ochi, Riu Yamashita, Takafumi Yamauchi, Daisuke Saigusa, Maiko Wagata, Taku Obara, Mami Ishikuro, Yoshiki Tsunemoto, Yuki Harada, Tomoko Shibata, Takahiro Mimori, Junko Kawashima, Fumiki Katsuoka, Takako Igarashi-Takai, Soichi Ogishima, Hirohito Metoki, Hiroaki Hashizume, Nobuo Fuse, Naoko Minegishi, Seizo Koshiba, Osamu Tanabe, Shinichi Kuriyama, Kengo Kinoshita, Shigeo Kure, Nobuo Yaegashi, Masayuki Yamamoto, Satoshi Hiyama, Masao Nagasaki
BMJ open 9 ( 2 ) e025939 2019年02月 [国際誌]
Genome analyses for the Tohoku Medical Megabank Project towards establishment of personalized healthcare.
Jun Yasuda, Kengo Kinoshita, Fumiki Katsuoka, Inaho Danjoh, Mika Sakurai-Yageta, Ikuko N Motoike, Yoko Kuroki, Sakae Saito, Kaname Kojima, Matsuyuki Shirota, Daisuke Saigusa, Akihito Otsuki, Junko Kawashima, Yumi Yamaguchi-Kabata, Shu Tadaka, Yuichi Aoki, Takahiro Mimori, Kazuki Kumada, Jin Inoue, Satoshi Makino, Miho Kuriki, Nobuo Fuse, Seizo Koshiba, Osamu Tanabe, Masao Nagasaki, Gen Tamiya, Ritsuko Shimizu, Takako Takai-Igarashi, Soichi Ogishima, Atsushi Hozawa, Shinichi Kuriyama, Junichi Sugawara, Akito Tsuboi, Hideyasu Kiyomoto, Tadashi Ishii, Hiroaki Tomita, Naoko Minegishi, Yoichi Suzuki, Kichiya Suzuki, Hiroshi Kawame, Hiroshi Tanaka, Yasuyuki Taki, Nobuo Yaegashi, Shigeo Kure, Fuji Nagami, Kenjiro Kosaki, Yoichi Sutoh, Tsuyoshi Hachiya, Atsushi Shimizu, Makoto Sasaki, Masayuki Yamamoto
Journal of biochemistry 165 ( 2 ) 139 - 158 2019年02月 [国際誌]
Construction of JRG (Japanese reference genome) with single-molecule real-time sequencing.
Masao Nagasaki, Yoko Kuroki, Tomoko F Shibata, Fumiki Katsuoka, Takahiro Mimori, Yosuke Kawai, Naoko Minegishi, Atsushi Hozawa, Shinichi Kuriyama, Yoichi Suzuki, Hiroshi Kawame, Fuji Nagami, Takako Takai-Igarashi, Soichi Ogishima, Kaname Kojima, Kazuharu Misawa, Osamu Tanabe, Nobuo Fuse, Hiroshi Tanaka, Nobuo Yaegashi, Kengo Kinoshita, Shiego Kure, Jun Yasuda, Masayuki Yamamoto
Human genome variation 6 27 - 27 2019年 [国際誌]
STR-realigner: a realignment method for short tandem repeat regions.
Kaname Kojima, Yosuke Kawai, Kazuharu Misawa, Takahiro Mimori, Masao Nagasaki
BMC genomics 17 ( 1 ) 991 - 991 2016年12月 [国際誌]
AP-SKAT: highly-efficient genome-wide rare variant association test.
Takanori Hasegawa, Kaname Kojima, Yosuke Kawai, Kazuharu Misawa, Takahiro Mimori, Masao Nagasaki
BMC genomics 17 ( 1 ) 745 - 745 2016年09月 [国際誌]
[Construction of 1070 Whole-genome Japanese Reference Panel and Bioinformatics].
Masao Nagasaki, Yosuke Kawai, Kaname Kojima, Takahiro Mimori, Yumi Yamaugchi-Kabata
Seikagaku. The Journal of Japanese Biochemical Society 88 ( 1 ) 15 - 24 2016年02月 [国内誌]
Japonica array: improved genotype imputation by designing a population-specific SNP array with 1070 Japanese individuals.
Yosuke Kawai, Takahiro Mimori, Kaname Kojima, Naoki Nariai, Inaho Danjoh, Rumiko Saito, Jun Yasuda, Masayuki Yamamoto, Masao Nagasaki
Journal of human genetics 60 ( 10 ) 581 - 7 2015年10月 [国際誌]
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals.
Masao Nagasaki, Jun Yasuda, Fumiki Katsuoka, Naoki Nariai, Kaname Kojima, Yosuke Kawai, Yumi Yamaguchi-Kabata, Junji Yokozawa, Inaho Danjoh, Sakae Saito, Yukuto Sato, Takahiro Mimori, Kaoru Tsuda, Rumiko Saito, Xiaoqing Pan, Satoshi Nishikawa, Shin Ito, Yoko Kuroki, Osamu Tanabe, Nobuo Fuse, Shinichi Kuriyama, Hideyasu Kiyomoto, Atsushi Hozawa, Naoko Minegishi, James Douglas Engel, Kengo Kinoshita, Shigeo Kure, Nobuo Yaegashi, Masayuki Yamamoto
Nature communications 6 8018 - 8018 2015年08月 [国際誌]
HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Informative Reads
Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto Sato, Yosuke Kawai, Masao Nagasaki
ALGORITHMS FOR COMPUTATIONAL BIOLOGY 8542 107 - 118 2014年
SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints
Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Testuo Shibuya, Masao Nagasaki
ALGORITHMS FOR COMPUTATIONAL BIOLOGY 8542 208 - 219 2014年
A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads.
Kaname Kojima, Naoki Nariai, Takahiro Mimori, Mamoru Takahashi, Yumi Yamaguchi-Kabata, Yukuto Sato, Masao Nagasaki
Bioinformatics (Oxford, England) 29 ( 22 ) 2835 - 43 2013年11月 [国際誌]
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