Concurrent Post
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Faculty of Science and Engineering School of Advanced Science and Engineering
Details of a Researcher
Updated on 2023/02/01
Faculty of Science and Engineering School of Advanced Science and Engineering
東京大学大学院 新領域創成科学研究科 メディカル情報生命専攻
The University of Tokyo Faculty of Science Undergraduate Program for Bioinformatics and Systems Biology
The University of Tokyo Ph. D.
Waseda University
Waseda University Research Institute for Science and Engineering
The University of Tokyo
Osaka University
日本学術振興会 特別研究員(PD)
Waseda University Faculty of Science and Engineering
JAPANESE SOCIETY FOR BIOINFORMATICS
日本RNA学会
Life, health and medical informatics
System genome science
Genome biology
Mirage 2.0: fast and memory-efficient reconstruction of gene-content evolution considering heterogeneous evolutionary patterns among gene families.
Tsukasa Fukunaga, Wataru Iwasaki
Bioinformatics (Oxford, England) 2022.06 [Refereed] [International journal]
Authorship:Lead author, Corresponding author
Bioinformatics Approaches for Determining the Functional Impact of Repetitive Elements on Non-coding RNAs.
Chao Zeng, Atsushi Takeda, Kotaro Sekine, Naoki Osato, Tsukasa Fukunaga, Michiaki Hamada
Methods in molecular biology (Clifton, N.J.) 2509 315 - 340 2022 [International journal]
Tsukasa Fukunaga, Wataru Iwasaki
Bioinformatics Advances 2021.07 [Refereed]
Authorship:Lead author, Corresponding author
Representation learning applications in biological sequence analysis.
Hitoshi Iuchi, Taro Matsutani, Keisuke Yamada, Natsuki Iwano, Shunsuke Sumi, Shion Hosoda, Shitao Zhao, Tsukasa Fukunaga, Michiaki Hamada
Computational and structural biotechnology journal 19 3198 - 3208 2021 [Refereed] [International journal]
MotiMul: A significant discriminative sequence motif discovery algorithm with multiple testing correction
Koichi Mori, Haruka Ozaki, Tsukasa Fukunaga
Proceedings - 2020 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020 186 - 193 2020.12 [Refereed]
Authorship:Last author, Corresponding author
Logicome profiler: Exhaustive detection of statistically significant logic relationships from comparative omics data
Tsukasa Fukunaga, Wataru Iwasaki
PLoS ONE 15 ( 5 ) e0232106 2020.05 [Refereed] [International journal]
Authorship:Lead author, Corresponding author
Targeting the TR4 nuclear receptor-mediated lncTASR/AXL signaling with tretinoin increases the sunitinib sensitivity to better suppress the RCC progression
Hangchuan Shi, Yin Sun, Miao He, Xiong Yang, Michiaki Hamada, Tsukasa Fukunaga, Xiaoping Zhang, Chawnshang Chang
Oncogene 39 ( 3 ) 530 - 545 2020.01 [Refereed] [International journal]
Lncrrisearch: A web server for lncRNA-RNA interaction prediction integrated with tissue-specific expression and subcellular localization data
Tsukasa Fukunaga, Junichi Iwakiri, Yukiteru Ono, Michiaki Hamada
Frontiers in Genetics 10 ( MAY ) 462 - 462 2019 [Refereed] [International journal]
Authorship:Lead author
A Novel Method for Assessing the Statistical Significance of RNA-RNA Interactions Between Two Long RNAs
Tsukasa Fukunaga, Michiaki Hamada
Journal of Computational Biology 25 ( 9 ) 976 - 986 2018.09 [Refereed] [International journal]
Authorship:Lead author, Corresponding author
MitoFish and mifish pipeline: A mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding
Yukuto Sato, Masaki Miya, Tsukasa Fukunaga, Tetsuya Sado, Wataru Iwasaki
Molecular Biology and Evolution 35 ( 6 ) 1553 - 1555 2018.06 [Refereed]
Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia
Yohei Kumagai, Susumu Yoshizawa, Yu Nakajima, Mai Watanabe, Tsukasa Fukunaga, Yoshitoshi Ogura, Tetsuya Hayashi, Kenshiro Oshima, Masahira Hattori, Masahiko Ikeuchi, Kazuhiro Kogure, Edward F. Delong, Wataru Iwasaki
ISME Journal 12 ( 5 ) 1329 - 1343 2018.05 [Refereed] [International journal]
RIblast: an ultrafast RNA-RNA interaction prediction system based on a seed-and-extension approach
Tsukasa Fukunaga, Michiaki Hamada
Bioinformatics (Oxford, England) 33 ( 17 ) 2666 - 2674 2017.09 [Refereed] [International journal]
Authorship:Lead author, Corresponding author
M. Miya, Y. Sato, T. Fukunaga, T. Sado, J. Y. Poulsen, K. Sato, T. Minamoto, S. Yamamoto, H. Yamanaka, H. Araki, M. Kondoh, W. Iwasaki
ROYAL SOCIETY OPEN SCIENCE 2 ( 7 ) 2015.07 [Refereed]
MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: Detection of more than 230 subtropical marine species
M. Miya, Y. Sato, T. Fukunaga, T. Sado, J. Y. Poulsen, K. Sato, T. Minamoto, S. Yamamoto, H. Yamanaka, H. Araki, M. Kondoh, W. Iwasaki
Royal Society Open Science 2 ( 7 ) 150088 2015.07 [Refereed]
Capr: Revealing structural specificities of rna-binding protein target recognition using clip-seq data
Tsukasa Fukunaga, Haruka Ozaki, Goro Terai, Kiyoshi Asai, Wataru Iwasaki, Hisanori Kiryu
Genome Biology 15 ( 1 ) R16 2014 [Refereed]
Authorship:Lead author, Corresponding author
Mitofish and mitoannotator: A mitochondrial genome database of fish with an accurate and automatic annotation pipeline
Wataru Iwasaki, Tsukasa Fukunaga, Ryota Isagozawa, Koichiro Yamada, Yasunobu Maeda, Takashi P. Satoh, Tetsuya Sado, Kohji Mabuchi, Hirohiko Takeshima, Masaki Miya, Mutsumi Nishida
Molecular Biology and Evolution 30 ( 11 ) 2531 - 2540 2013.11 [Refereed]
Evolutionary Origin of the Scombridae (Tunas and Mackerels): Members of a Paleogene Adaptive Radiation with 14 Other Pelagic Fish Families
Masaki Miya, Matt Friedman, Takashi P. Satoh, Hirohiko Takeshima, Tetsuya Sado, Wataru Iwasaki, Yusuke Yamanoue, Masanori Nakatani, Kohji Mabuchi, Jun G. Inoue, Jan Yde Poulsen, Tsukasa Fukunaga, Yukuto Sato, Mutsumi Nishida
PLoS ONE 8 ( 9 ) e73535 2013.09 [Refereed]
バイオインフォマティクスのための生命科学入門 (バイオインフォマティクスシリーズ 1)
福永 津嵩(著), 岩切 淳一(著), 浜田 道昭(監修)( Part: Joint author)
コロナ社 2022.07 ISBN: 4339027316
優秀口頭発表賞
2021 第十回生命医薬情報学連合大会 The inverse Potts model improves accuracy of phylogenetic profiling
Winner: 福永津嵩, 岩崎渉
ポスター賞
2020 第九回生命医薬情報学連合大会 統計的有意性を担保可能な系列パターンマイニングに基づく配列モチーフ検出ソフトウェアの開発
Winner: 毛利公一, 尾崎遼, 福永津嵩
ポスター賞
2016 第五回生命医薬情報学連合大会 RIblast: A high-speed RNA-RNA interaction prediction system for comprehensive lncRNA interactome analysis.
Winner: 福永津嵩, 浜田道昭
大規模メタゲノムデータを用いた高精度機能未知遺伝子推定手法の開発
日本学術振興会 科学研究費助成事業 新学術領域研究(研究領域提案型)
Project Year :
福永 津嵩
リピート要素のde novo発見に基づく長鎖ノンコーディングRNAの機能の解明
日本学術振興会 科学研究費助成事業 基盤研究(A)
Project Year :
浜田 道昭, 小野口 真広, 福永 津嵩
逆イジングモデル法に基づく機能未知な微生物遺伝子の機能推定
日本学術振興会 科学研究費助成事業 新学術領域研究(研究領域提案型)
Project Year :
福永 津嵩
統計的論理関係解析法に基づく機能未知遺伝子の機能推定
日本学術振興会 科学研究費助成事業 若手研究
Project Year :
福永 津嵩
lncRNA-mRNAの相互作用ネットワークに基づくlncRNAの機能推定
日本学術振興会 科研費 (新学術領域研究) 「ノンコーディングRNAネオタクソノミ」公募研究
Project Year :
福永 津嵩
Computational Ethologyで解き明かす動物の群れ形成メカニズム
日本学術振興会 科研費 (特別研究員奨励費)
Project Year :
福永 津嵩
定量的動画データ解析から迫るメダカの社会性行動
日本学術振興会 科研費(特別研究員奨励費)
Project Year :
福永 津嵩
The inverse Potts model improves accuracy of phylogenetic profiling
福永津嵩, 岩崎渉
第10回生命医薬情報学連合大会
Presentation date: 2021.09
遺伝子獲得/欠失速度の不均一性を考慮したゲノム進化史再構築
福永津嵩, 岩崎渉 [Invited]
日本進化学会第23回東京大会
Presentation date: 2021.08
Frontiers in Genetics Review Editor
日本バイオインフォマティクス学会 理事
Citation count denotes the number of citations in papers published for a particular year.