Updated on 2024/12/21

写真a

 
NAKANISHI, Jun
 
Affiliation
Faculty of Science and Engineering, Graduate School of Advanced Science and Engineering
Job title
Professor(without tenure)
Degree
Doctor of Science ( 東京大学 )

Research Experience

  • 2016.04
    -
    Now

    National Institute for Materials Science   Group Leader

  • 2007.10
    -
    2016.03

    National Institute for Materials Science   Independent Scientist

  • 2005.10
    -
    2009.03

    科学技術振興機構 さきがけ研究者

  • 2006.10
    -
    2007.09

    物質・材料研究機構 主任研究員

  • 2005.04
    -
    2005.09

    Waseda University   Consolidated Research Institute for Advanced Science and Medical Care

  • 2002.04
    -
    2005.03

    理化学研究所基礎科学特別研究員

  • 2005
    -
     

    - JST, PREST Researcher

  • 2005
    -
     

    BME, ASMeW, Waseda Univ., Research Associate

  • 2002
    -
    2005

    RIKEN, Special Postdoctoral Researcher

  • 2001
    -
    2002

    日本学術振興会特別研究員-PD

  • 2000
    -
    2002

    JSPS Research Fellow

  • 2001
    -
     

    Ph. D., Dept. Chem., School Sci. Univ. Tokyo

  • 2000
    -
    2001

    日本学術振興会特別研究員-DC2

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Education Background

  •  
    -
    2001

    The University of Tokyo  

  •  
    -
    2001

    The University of Tokyo   Graduate School, Division of Science   Department of Chemistry  

  •  
    -
    1996

    The University of Tokyo   Faculty of Science   Department of Chemistry  

Professional Memberships

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    The Chemical Society of Japan

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    Japanese Society for Biomaterials

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    The Society of Polymer Science, Japana

  •  
     
     

    The Japanese Society for Analytical Chemistry

  •  
     
     

    The Materials Research Society of Japan

Research Areas

  • Nanobioscience / Chemical biology / Analytical chemistry / Biomaterials / Biomedical engineering

Research Interests

  • Mechanobiology

  • Biomaterials

  • 細胞外マトリクス

  • 蛍光イメージング

  • ケージド化合物

  • Extracellular matrices

  • Fluorescence imaging

  • Caged compounds

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Awards

  • Young Scientists' Prize

    2011.04   Minister of MEXT  

    Winner: NAKANISHI Jun

  • Japan Society of Analytical Chemistry Award for Younger Researchers

    2009.09   Japan Society for Analytical Chemistry  

    Winner: NAKANISHI Jun

  • 日本分析化学会 イノベーション賞

    2006  

  • 2005高木賞(第14回インテリジェント材料・システムシンポジウム)

    2005  

  • 2005 Takagi Awards (14th Intelligent Materials and System Symposium)

    2005  

 

Papers

  • Data-driven optimization of the in silico design of ionic liquids as interfacial cell culture fluids

    Jun Nakanishi, Takeshi Ueki, Sae Dieb, Hidenori Noguchi, Shota Yamamoto, Keitaro Sodeyama

    Science and Technology of Advanced Materials    2024.12

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  • Microtubules Disruption Alters the Cellular Structures and Mechanics Depending on Underlying Chemical Cues.

    Shimaa A Abdellatef, Hongxin Wang, Jun Nakanishi

    Small (Weinheim an der Bergstrasse, Germany)     e2312282  2024.09  [International journal]

     View Summary

    The extracellular matrix determines cell morphology and stiffness by manipulating the cytoskeleton. The impacts of extracellular matrix cues, including the mechanical and topographical cues on microtubules and their role in biological behaviors, are previously studied. However, there is a lack of understanding about how microtubules (MTs) are affected by environmental chemical cues, such as extracellular matrix density. Specifically, it is crucial to understand the connection between cellular morphology and mechanics induced by chemical cues and the role of microtubules in these cellular responses. To address this, surfaces with high and low cRGD (cyclic Arginine-Glycine-Aspartic acid) peptide ligand densities are used. The cRGD is diluted with a bioinert ligand to prevent surface native cellular remodeling. The cellular morphology, actin, and microtubules differ on these surfaces. Confocal fluorescence microscopes and atomic force microscopy (AFM) are used to determine the structural and mechanical cellular responses with and without microtubules. Microtubules are vital as an intracellular scaffold in elongated morphology correlated with low cRGD compared to rounded morphology in high cRGD substrates. The contributions of MTs to nucleus morphology and cellular mechanics are based on the underlying cRGD densities. Finally, this study reveals a significant correlation between MTs, actin networks, and vimentin in response to the underlying densities of cRGD.

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  • Reversible Solubility Switching of a Polymer Triggered by Visible‐Light Responsive Azobenzene Photochromism with Negligible Thermal Relaxation

    Takeshi Ueki, Yuna Osaka, Kenta Homma, Shota Yamamoto, Aya Saruwatari, Hongxin Wang, Masao Kamimura, Jun Nakanishi

    Macromolecular Rapid Communications    2024.08

     View Summary

    Abstract

    This study reports the reversible solubility switching of a polymer triggered by non‐phototoxic visible light. A photochromic polymerizable azobenzene monomer with four methoxy groups at the ortho‐position (mAzoA) was synthesized, exhibiting reversible photoisomerization between trans‐ and cis‐states using green (546 nm) and blue light (436 nm). Free radical copolymerization of hydrophilic dimethylacrylamide (DMAAm) with mAzoA produced a light‐responsive random copolymer (P(mAzoA‐r‐DMAAm)) that shows a reversible photochromic reaction to visible light. Optimizing mAzoA content resulted in P(mAzoA10.7‐r‐DMAAm)3.0 kDa exhibiting LCST‐type phase separation in PBS (pH 7.4) with trans‐ and cis‐states at 39.2 °C and 32.9 °C, respectively. The bistable temperature range of 6.3 °C covers 37 °C, suitable for mammalian cell culture. Reversible solubility changes were demonstrated under alternating green and blue light at 37 °C. 1H NMR indicated significant retardation of thermal relaxation from cis‐ to trans‐states, preventing undesired thermal mechanical degradation. Madin Darby Canine Kidney (MDCK) cells adhered to the P(mAzoA‐r‐DMAAm) hydrogel, confirming its non‐cytotoxicity and potential for biocompatible interfaces. This principle is useful for developing hydrogels that can reversibly stimulate cells mechanically or chemically in response to visible light.

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  • Dynamic cell photo-manipulation technology for the molecular and mechanical regulation analyses of collective cell migration

    Kazuhiro Tatematsu, Shota Yamamoto, Masao Kamimura, Kazuo Yamaguchi, Jun Nakanishi

    Talanta Open   9  2024.08

     View Summary

    Collective cell migration is an essential biological process. Migration behaviors of multiple cellular units depend on the mechanical and chemical properties of their scaffolds and the geometry of the cells. However, the mechanisms by which these properties synergistically regulate the collective cell characteristics remain unknown. A robust method is required to analyze collective cell migration. Therefore, in this study, we developed a new method for collective cell migration analysis using defined chemical, mechanical, and geometrical properties. Our method is based on a poly(acrylic acid) hydrogel, whose surface is functionalized with photocleavable poly(ethylene glycol) and a cell-adhesive peptide. By controlling the UV irradiation of the photoactivatable hydrogel, we created geometrically controlled cellular clusters and induced collective migration. Furthermore, chemical and mechanical cues exposed to cell clusters were manipulated depending on the surface density of the cell-adhesive peptide and crosslinking density of the hydrogel. As a proof of concept, we also demonstrated that the collective migration of epithelial cells was synergistically regulated by the chemical and mechanical properties of the scaffold. Our results suggest the new photoactivatable substrate as a promising tool for advanced molecular and mechanobiological analyses of collective cell migration.

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  • Ultimately Adaptive Fluid Interfacial Phospholipid Membranes Unveiled Unanticipated High Cellular Mechanical Work

    Zhou Lu, Mizuki Tenjimbayashi, Junhong Zhou, Jun Nakanishi

    Advanced Materials   36 ( 27 )  2024.07

     View Summary

    Living cells actively interact biochemically and mechanically with the surrounding extracellular matrices (ECMs) and undergo dramatic morphological and dimensional transitions, concomitantly remodeling ECMs. However, there is no suitable method to quantitatively discuss the contribution of mechanical interactions in such mutually adaptive processes. Herein, a highly deformable “living” cellular scaffold is developed to evaluate overall mechanical energy transfer between cell and ECMs. It is based on the water–perfluorocarbon interface decorated with phospholipids bearing a cell-adhesive ligand and fluorescent tag. The bioinert nature of the phospholipid membranes prevents the formation of solid-like protein nanofilms at the fluid interface, enabling to visualize and quantify cellular mechanical work against the ultimately adaptive model ECM. A new cellular wetting regime is identified, wherein interface deformation proceeds to cell flattening, followed by its eventual restoration. The cellular mechanical work during this adaptive wetting process is one order of magnitude higher than those reported with conventional elastic platforms. The behavior of viscous liquid drops at the air–water interface can simulate cellular adaptive wetting, suggesting that overall viscoelasticity of the cell body predominates the emergent wetting regime and regulates mechanical output. Cellular-force-driven high-energy states on the adaptive platform can be useful for cell fate manipulation.

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  • Photoactivatable substrates show diverse phenotypes of leader cells in collective migration when moving along different extracellular matrix proteins.

    Shimaa A Abdellatef, Francesca Bard, Jun Nakanishi

    Biomaterials science   12 ( 13 ) 3446 - 3457  2024.06  [International journal]

     View Summary

    In cancer metastasis, collectively migrating clusters are discriminated into leader and follower cells that move through extracellular matrices (ECMs) with different characteristics. The impact of changes in ECM protein types on leader cells and migrating clusters is unknown. To address this, we investigated the response of leader cells and migrating clusters upon moving from one ECM protein to another using a photoactivatable substrate bearing photocleavable PEG (PCP), whose surface changes from protein-repellent to protein-adhesive in response to light. We chose laminin and collagen I for our study since they are abundant in two distinct regions in living tissues, namely basement membrane and connective tissue. Using the photoactivatable substrates, the precise deposition of the first ECM protein in the irradiated areas was achieved, followed by creating well-defined cellular confinements. Secondary irradiation enabled the deposition of the second ECM protein in the new irradiated regions, resulting in region-selective heterogeneous and homogenous ECM protein-coated surfaces. Different tendencies in leader cell formation from laminin into laminin compared to those migrating from laminin into collagen were observed. The formation of focal adhesion and actin structures for cells within the same cluster in the ECM proteins responded according to the underlying ECM protein type. Finally, integrin β1 was crucial for the appearance of leader cells for clusters migrating from laminin into collagen. However, when it came to laminin into laminin, integrin β1 was not responsible. This highlights the correlation between leader cells in collective migration and the biochemical signals that arise from underlying extracellular matrix proteins.

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  • Ionic Liquid Interface as A Cell Scaffold

    Takeshi Ueki, Koichiro Uto, Shota Yamamoto, Ryota Tamate, Yuji Kamiyama, Jia Xiaofang, Hidenori Noguchi, Kosuke Minami, Katsuhiko Ariga, Hongxin Wang, Jun Nakanishi

    Advanced Materials    2024.01

     View Summary

    Abstract

    In sharp contrast to conventional solid/hydrogel platforms, water‐immiscible liquids, such as perfluorocarbons and silicones, allow the adhesion of mammalian cells via protein nanolayers (PNLs) formed at the interface. However, fluorocarbons and silicones, which have been typically used for liquid cell culture, possess only narrow ranges of physicochemical parameters and have not allowed for a wide variety of cell culturing environment. In this paper, we propose that water‐immiscible ionic liquids (ILs) are a new family of liquid substrate with tunable physicochemical properties and high solvation capabilities. Tetraalkylphosphonium‐based ILs have been identified as non‐cytotoxic ILs, whereon human mesenchymal stem cells (hMSCs) were successfully cultured. By reducing the cation charge distribution, or ionicity, via alkyl chain elongation, the interface allowed cell spreading with matured focal contacts. High‐speed atomic force microscopy observations of the PNL formation process suggested that the cation charge distribution significantly altered the protein adsorption dynamics, which were associated with the degree of protein denaturation and the PNL mechanics. Moreover, by exploiting ILs dissolution capability, we fabricated an ion‐gel cell scaffold. This enables us to further identify the significant contribution of bulk subphase mechanics to cellular mechanosensing in liquid‐based culture scaffolds.

    This article is protected by copyright. All rights reserved

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  • Mapping stress inside living cells by atomic force microscopy in response to environmental stimuli

    Hongxin Wang, Han Zhang, Ryo Tamura, Bo Da, Shimaa A. Abdellatef, Ikumu Watanabe, Nobuyuki Ishida, Daisuke Fujita, Nobutaka Hanagata, Tomoki Nakagawa, Jun Nakanishi

    Science and Technology of Advanced Materials   24 ( 1 )  2023.10

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  • Manipulating the Dynamic Adaptivity of a Fluid Interface to Maintain the Multipotency of Mesenchymal Stromal Cells

    Wenyan Lyu, Wei Hu, Jiaming Shi, Jieman Chen, Jingwen Song, Qindan Zhang, Xuefeng Yuan, Dairui Li, Jun Nakanishi, Xiaofang Jia

    Advanced Healthcare Materials   12 ( 24 )  2023.09

     View Summary

    The native extracellular matrix is highly dynamic with continuous mutual feedback between cells being responsible for many important cell function regulators. However, establishing bidirectional interaction between complex adaptive microenvironments and cells remains elusive. Herein an adaptive biomaterial based on lysozyme monolayers self-assembled at a perfluorocarbon FC40–water interface is reported. The dynamic adaptivity of interfacially assembled protein nanosheets is modulated independently of bulk mechanical properties by covalent crosslinking. This provides a scenario to establish bidirectional interactions of cells with liquid interfaces of varying dynamic adaptivity. This is found that growth and multipotency of human mesenchymal stromal cells (hMSCs) are enhanced at the highly adaptive fluid interface. The multipotency retention of hMSCs is mediated by low cell contractility and metabolomic activity involving the continuous mutual feedback between the cells and materials. Consequently, an understanding of the cells’ response to dynamic adaptivity has substantial implications for regenerative medicine and tissue engineering.

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  • Polarity Does Not Matter: Molecular Weight Reverses the Photoisomerization‐Induced Phase Separation of an Azobenzene‐Bearing Polymer

    Kenta Homma, Alice C. Chang, Shota Yamamoto, Takeshi Ueki, Jun Nakanishi

    Macromolecular Rapid Communications   44 ( 14 )  2023.05

     View Summary

    Abstract

    The non‐canonical photoisomerization‐induced phase separation of an azobenzene‐bearing polymer is found. The polymer composed of acrylate‐based azobenzene (AzoAA) and N,N‐dimethylacrylamide (DMA), namely poly(AzoAA‐r‐DMA), phase separates under visible light‐induced cis‐to‐trans isomerization at high molecular weight, whereas the phase separation is realized under UV light‐induced trans‐to‐cis isomerization at low molecular weight. Conventionally, the origin of photoisomerization‐induced phase separation is believed to arise from the difference in polarity between the apolar trans and polar cis states; thereby the direction of phase changes, either to separate or dissolute, is uniquely determined by the polarity changes during the isomerization of azobenzene. Contrary to this common perception, the poly(AzoAA‐r‐DMA) in this study phase separates through both trans and cis isomerization, depending on the molecular weight. The non‐canonical phase separation of poly(AzoAA‐r‐DMA) reported herein suggests that molecular weight plays a significant role in determining the phase behavior of azobenzene‐bearing polymers. This study provides a platform for the development of spatial‐temporally controlled delivery vehicles and microreactors.

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  • Growth and Migration Blocking Effect of Nanaomycin K, a Compound Produced by Streptomyces sp., on Prostate Cancer Cell Lines In Vitro and In Vivo.

    Yuto Hirata, Katsumi Shigemura, Michika Moriwaki, Masato Iwatsuki, Yuki Kan, Tooru Ooya, Koki Maeda, Youngmin Yang, Takuji Nakashima, Hirotaka Matsuo, Jun Nakanishi, Masato Fujisawa

    Cancers   15 ( 10 )  2023.05  [International journal]

     View Summary

    Since castration-resistant prostate cancer (CRPC) acquires resistance to molecularly targeted drugs, discovering a class of drugs with different mechanisms of action is needed for more efficient treatment. In this study, we investigated the anti-tumor effects of nanaomycin K, derived from "Streptomyces rosa subsp. notoensis" OS-3966. The cell lines used were LNCaP (non-CRPC), PC-3 (CRPC), and TRAMP-C2 (CRPC). Experiments included cell proliferation analysis, wound healing analysis, and Western blotting. In addition, nanaomycin K was administered intratumorally to TRAMP-C2 carcinoma-bearing mice to assess effects on tumor growth. Furthermore, immuno-histochemistry staining was performed on excised tissues. Nanaomycin K suppressed cell proliferation in all cell lines (p < 0.001) and suppressed wound healing in TRAMP-C2 (p = 0.008). Nanaomycin K suppressed or showed a tendency to suppress the expression of N-cadherin, Vimentin, Slug, and Ras in all cell lines, and suppressed the phosphorylation of p38, SAPK/JNK, and Erk1/2 in LNCaP and TRAMP-C2. In vivo, nanaomycin K safely inhibited tumor growth (p = 0.001). In addition, suppression of phospho-Erk1/2 and increased expression of E-cadherin and cleaved-Caspase3 were observed in excised tumors. Nanaomycin K inhibits tumor growth and suppresses migration by inhibiting epithelial-mesenchymal transition in prostate cancer. Its mechanism of action is related to the inhibition of phosphorylation of the MAPK signaling pathway.

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  • Mechanistic investigation into selective cytotoxic activities of gold nanoparticles functionalized with epidermal growth factor variants

    Aiwen Zhang, Shimaa A. Abdellatef, Jun Nakanishi

    Analytical Sciences   39 ( 3 ) 395 - 405  2023.03

     View Summary

    Epidermal growth factor (EGF) gains unique selective cytotoxicity against cancer cells upon conjugation with gold nanoparticles (GNPs). We have previously developed several lysine-free EGF mutants for favorable interactions between the nanoparticle conjugates with EGF receptor (EGFR) and found one mutant (SR: K28S/K48R) showing stronger anticancer activities. However, the exact mechanisms for the selective cytotoxicity enhancement in the SR mutant remained unsolved. In this study, we analyzed how the nanoparticle conjugates of EGF variants interacted differently with A431 cancer cells, in terms of receptor binding, activation, and trafficking. Our results indicate that the essential feature of the SR-GNP conjugates in the cytotoxicity enhancement is their preferential activation of the clathrin-independent endocytosis pathway. It is suggested that we should focus on not only ligand-receptor binding affinity but also the selectivity of the receptor endocytic route to optimize the anticancer effects in this modality. Graphical abstract: [Figure not available: see fulltext.]

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  • Photoactivatable surfaces resolve the impact of gravity vector on collective cell migratory characteristics

    Shinya Sakakibara, Shimaa A. Abdellatef, Shota Yamamoto, Masao Kamimura, Jun Nakanishi

    Science and Technology of Advanced Materials   24 ( 1 )  2023

     View Summary

    Despite considerable interest in the impact of space travel on human health, the influence of the gravity vector on collective cell migration remains unclear. This is primarily because of the difficulty in inducing collective migration, where cell clusters appear in an inverted position against gravity, without cellular damage. In this study, photoactivatable surfaces were used to overcome this challenge. Photoactivatable surfaces enable the formation of geometry-controlled cellular clusters and the remote induction of cellular migration via photoirradiation, thereby maintaining the cells in the inverted position. Substrate inversion preserved the circularity of cellular clusters compared to cells in the normal upright position, with less leader cell appearance. Furthermore, the inversion of cells against the gravity vector resulted in the remodeling of the cytoskeletal system via the strengthening of external actin bundles. Within the 3D cluster architecture, enhanced accumulation of active myosin was observed in the upper cell-cell junction, with a flattened apical surface. Depending on the gravity vector, attenuating actomyosin activity correlates with an increase in the number of leader cells, indicating the importance of cell contractility in collective migration phenotypes and cytoskeletal remodeling.

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  • Adaptive liquid interfaces induce neuronal differentiation of mesenchymal stem cells through lipid raft assembly

    Xiaofang Jia, Jingwen Song, Wenyan Lv, Jonathan P. Hill, Jun Nakanishi, Katsuhiko Ariga

    Nature Communications    2022.06

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  • Precise Tuning and Characterization of Viscoelastic Interfaces for the Study of Early Epithelial–Mesenchymal Transition Behaviors

    Alice Chinghsuan Chang, Koichiro Uto, Shimaa A. Abdellatef, Jun Nakanishi

    Langmuir   38 ( 17 ) 5307 - 5314  2022.05

     View Summary

    There is growing evidence that cellular functions are regulated by the viscoelastic nature of surrounding matrices. This study aimed to investigate the impact of interfacial viscoelasticity on adhesion and epithelial-mesenchymal transition (EMT) behaviors of epithelial cells. The interfacial viscoelasticity was manipulated using spin-coated thin films composed of copolymers of ϵ-caprolactone and d,l-lactide photo-cross-linked with benzophenone, whose mechanical properties were characterized using atomic force microscopy and a rheometer. The critical range for the morphological transition of epithelial Madin-Darby canine kidney (MDCK) cells was of the order of 102 ms relaxation time, which was 1-2 orders of magnitude smaller than the relaxation times reported (10-102 s). An analysis of strain rate-dependent viscoelastic properties revealed that the difference was caused by the different strain rate/frequency used for the mechanical characterization of the interface and bulk. Furthermore, decoupling of the interfacial viscous and elastic terms demonstrated that E/N-cadherin expression levels were regulated differently by interfacial relaxation and elasticity. These results confirm the significance of precise manipulation and characterization of interfacial viscoelasticity in mechanobiology studies on EMT progression.

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  • Static and photoresponsive dynamic materials to dissect physical regulation of cellular functions

    Jun Nakanishi, Shota Yamamoto

    Biomaterials Science    2022

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  • Improved anti-cancer effect of epidermal growth factor-gold nanoparticle conjugates by protein orientation through site-specific mutagenesis

    Aiwen Zhang, Jun Nakanishi

    Science and Technology of Advanced Materials   22 ( 1 ) 616 - 626  2021.12

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  • Viscoelastically tunable substrates elucidate the interface-relaxation-dependent adhesion and assembly behaviors of epithelial cells.

    Alice Chinghsuan Chang, Koichro Uto, Kenta Homma, Jun Nakanishi

    Biomaterials   274   120861 - 120861  2021.07  [International journal]

     View Summary

    Recent progress in mechanobiology sheds light on the regulation of cellular phenotypes by dissipative property of matrices, i.e., viscosity, fluidity, and stress relaxation, in addition to extensively studied elasticity. However, most researches have focused on bulk mechanics, despite cells in 2D culture can only interact with matrix interface directly. Here, we studied the impact of interfacial viscosity as well as elasticity of substrates on the early stage of adhesion behaviors of epithelial cells through new material design and mechanical characterization. The materials are copolymers of ε-caprolactone and d,l-lactide photocrosslinked by benzophenone. The substrate viscoelasticity changes depending on the polymer molecular weight and irradiation time. The interfacial elasticity and relaxation were determined by atomic force microscopy with modes of nanoindentation and tip-dwelling, respectively. MDCK cells changed morphologically, ranging from loose beaded assembly to more compact spheroids and eventual spread monolayer clusters, in response to the interfacial viscoelasticity change. Such morphological changes were mainly determined by substrate interfacial relaxation, rather than interfacial elasticity. Single-cell tracking identified biphasic motility with the minimum speed at intermediate relaxation time (~350 ms), where cells showed transitional morphologies between epithelial and mesenchymal traits. In that relaxation level, partially deformed cells moved around to coalesce with surrounding cells, eventually assembling into compact cellular aggregates. These results highlight, unlike the conventional hanging-drop technique, an appropriate level of interfacial relaxation is critical for efficient cell aggregate maturation on adhesive viscoelastic matrices. This work not only elucidates that the interfacial relaxation as the essential mechanical parameter for epithelial cell adhesion and migration, but also gives useful tips for creating physiologically relevant drug screening platform.

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  • Epidermal Growth Factor-gold Nanoparticle Conjugates-induced Cellular Responses: Effect of Interfacial Parameters between Cell and Nanoparticle

    Shota Yamamoto, Jun Nakanishi

    ANALYTICAL SCIENCES   37 ( 5 ) 741 - 745  2021.05

     View Summary

    The original activity of epidermal growth factor (EGF) is to promote cell growth or block their apoptosis. However, its activity changes to proapoptotic, completely opposite to the original one, upon conjugation to nanoparticles. We have recently identified that this unique activity conversion was mediated by the confinement of EGF receptor (EGFR) within membrane rafts and signal condensation therein. In this study, we investigated the effect of interfacial parameters between the EGF molecule immobilized at the nanoparticle surface and the cell-surface membrane receptors and analyzed how their interactions were transduced to downstream signaling leading to apoptotic responses. We also studied the cell-type selective apoptotic responses and compared them with EGFR expression level to demonstrate the potential of the nanoparticle conjugate as a new type of anti-cancer drug activating EGFR rather than conventional blocking approaches.

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  • Nanaomycin K inhibited epithelial mesenchymal transition and tumor growth in bladder cancer cells in vitro and in vivo.

    Koichi Kitagawa, Katsumi Shigemura, Aya Ishii, Takuji Nakashima, Hirotaka Matsuo, Yoko Takahashi, Satoshi Omura, Jun Nakanishi, Masato Fujisawa

    Scientific reports   11 ( 1 ) 9217 - 9217  2021.04  [International journal]

     View Summary

    Nanaomycin K, derived from Streptomyces rosa subsp. notoensis OS-3966T, has been discovered to have inhibitory bioactivity on epithelial-mesenchymal transition (EMT), an important mechanism of cancer cell invasion and migration. In this study, we examined the anti-EMT and anti-tumor effect of nanaomycin K in bladder cancer, where EMT has important roles in progression. We treated two bladder cancer lines, non-muscle-invasive KK47 and muscle-invasive T24, with nanaomycin K to determine the effects on cell proliferation, apoptosis and expression of EMT markers in vitro. Wound-healing assays were performed to assess cell invasion and migration. We conducted an in vivo xenograft study in which mice were inoculated with bladder cancer cells and treated with intratumoral administration of nanaomycin K to investigate its anti-tumor and EMT inhibition effects. As the results, nanaomycin K (50 µg/mL) significantly inhibited cell proliferation in KK47 (p < 0.01) and T24 (p < 0.01) in the presence of TGF-β, which is an EMT-inducer. Nanaomycin K (50 µg/mL) also significantly inhibited cell migration in KK47 (p < 0.01) and T24 (p < 0.01), and induced apoptosis in both cell lines in the presence of TGF-β (p < 0.01). Nanaomycin K increased the expression of E-cadherin and inhibited the expression of N-cadherin and vimentin in both cell lines. Nanaomycin K also decreased expression of Snail, Slug, phospho-p38 and phospho-SAPK/JNK especially in T24. Intratumoral administration of nanaomycin K significantly inhibited tumor growth in both KK47 and T24 cells at high dose (1.0 mg/body) (p = 0.009 and p = 0.003, respectively) with no obvious adverse events. In addition, nanaomycin K reversed EMT and significantly inhibited the expression of Ki-67 especially in T24. In conclusion, we demonstrated that nanaomycin K had significant anti-EMT and anti-tumor effects in bladder cancer cells, suggesting that nanaomycin K may be a therapeutic candidate for bladder cancer treatment.

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  • Design of azobenzene-bearing hydrogel with photoswitchable mechanics driven by photo-induced phase transition for in vitro disease modeling.

    Kenta Homma, Alice C Chang, Shota Yamamoto, Ryota Tamate, Takeshi Ueki, Jun Nakanishi

    Acta biomaterialia   132   103 - 113  2021.03  [International journal]

     View Summary

    Mechanics of the extracellular matrix (ECM) exhibit changes during many biological events. During disease progression, such as cancer, matrix stiffening or softening occurs due to crosslinking of the collagen matrix or matrix degradation through cell-secreted enzymes. Engineered hydrogels have emerged as a prime in vitro model to mimic such dynamic mechanics during disease progression. Although there have been a variety of engineered hydrogels, few can offer both stiffening and softening properties under the same working principle. In addition, to model individual disease progression, it is desirable to control the kinetics of mechanical changes. To this end, we describe a photoresponsive hydrogel that undergoes stiffness changes by the photo-induced phase transition. The hydrogel was composed of a copolymer of azobenzene acrylate monomer (AzoAA) and N,N-dimethyl acrylamide (DMA). By tuning the amount of azobenzene, the phase transition behavior of this polymer occurs solely by light irradiation, because of the photoisomerization of azobenzene. This phase behavior was confirmed at 37 °C by turbidity measurements. In addition, the crosslinked poly(AzoAA-r-DMA) gel undergoes reversible swelling-deswelling upon photoisomerization by ultraviolet or visible light. Furthermore, the poly(AzoAA-r-DMA) sheet gels exhibited modulus changes at different isomerization states of azobenzene. When MCF-7 cells were cultured on the gels, stiffening at different timepoints induced varied responses in the gene expression levels of E-cadherin. Not only did this suggest an adaptive behavior of the cells against changes in mechanics during disease progression, this also demonstrated our material's potential towards in vitro disease modeling. STATEMENT OF SIGNIFICANCE: During disease progression such as cancer, cellular microenvironment called extracellular matrix (ECM) undergoes stiffness changes. Hydrogels, which are swollen network of crosslinked polymers, have been used to model such dynamic mechanical environment of the ECM. However, few could offer both stiffening and softening properties under the same working principle. Herein, we fabricated a novel photoresponsive hydrogel with switchable mechanics, activated by photo-induced structural change of the polymer chains within the hydrogel. When breast cancer cells were cultured on our dynamic hydrogels, gene expression and morphological observation suggested that cells react to changes in stiffness by a transient response, as opposed to a sustained one. The photoresponsive hydrogel offers possibility for use as a patient-specific model of diseases.

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  • Large-Area Aligned Fullerene Nanocrystal Scaffolds as Culture Substrates for Enhancing Mesenchymal Stem Cell Self-Renewal and Multipotency

    Jingwen Song, Xiaofang Jia, Kosuke Minami, Jonathan P. Hill, Jun Nakanishi, Lok Kumar Shrestha, Katsuhiko Ariga

    ACS Applied Nano Materials   3 ( 7 ) 6497 - 6506  2020.07

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  • Production of extracellular polysaccharides and phycobiliproteins from Tolypothrix sp. PCC7601 using mechanical milking systems

    Alice Uchida, Yukiko Higashi, Shota Yamamoto, Jun Nakanishi, Naoki Kanayama, Kazuhiro Shibata, Masaki Ihara

    ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS   48  2020.06

     View Summary

    The bio-industrial application of microalgae has gained much attention in recent years. One of the challenges in this field is to lower the cultivation and harvest costs and to achieve the steady productivity. To address this, new systems have been proposed, in which the products are extracted without killing the algal cells. These non-destructive extraction systems are called "milking." Some of the milking systems reported so far are continuous processes where culturing and milking occur simultaneously, and the others are a periodic process where cells are cyclically cultured and milked. These systems are based on the organic solvent extraction of non-polar products, such as lipids, terpenes, and carotenoids. However, a special facility required for handling organic solvents increases the costs and solvents lost during milking need to be recouped. In this study, we examined a solvent-free method, based on mechanical milking using a shearing disperser (glass homogenizer). We cultured the N-2-fixing filamentous cyanobacteria, Tolypothrbc sp. PCC7601 in non-sterile agricultural water and performed long-term (87 days) milking cycles to harvest the extracellular carbohydrates and phycobiliproteins. As a result, the productivity of extracellular carbohydrates and the cell densities remained constant throughout the milking cycle, yielding 90-140 mg/L of extracellular carbohydrates every 3 weeks. Our results demonstrated that mechanical milking is a practical and effective method that can be used to harvest products from algae steadily.

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  • Nanaomycin K, a new epithelial-mesenchymal transition inhibitor produced by the actinomycete "Streptomyces rosa subsp. notoensis" OS-3966.

    Hirotaka Matsuo, Jun Nakanishi, Yoshihiko Noguchi, Koichi Kitagawa, Katsumi Shigemura, Toshiaki Sunazuka, Yōko Takahashi, Satoshi Ōmura, Takuji Nakashima

    Journal of bioscience and bioengineering   129 ( 3 ) 291 - 295  2020.03  [Refereed]  [Domestic journal]

     View Summary

    A new nanaomycin analog, nanaomycin K, was isolated from a cultured broth of actinomycete strain "Streptomyces rosa subsp. notoensis" OS-3966. Nuclear magnetic resonance (NMR) analyses revealed that the planar structure of nanaomycin K had an ergothioneine moiety. To determine the absolute configuration, nanaomycin K was semisynthesized using standards of nanaomycin E and l-ergothioneine. The natural and semisynthetic nanaomycin K were identified as the same compounds based on retention time, mass spectrometry, 1H NMR, and optical rotation data. Nanaomycin K showed cytotoxicity against Madin-Darby canine kidney (MDCK) cells undergoing transforming growth factor (TGF) β1-induced epithelial-mesenchymal transition.

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  • Adaptive Liquid Interfacially Assembled Protein Nanosheets for Guiding Mesenchymal Stem Cell Fate

    Xiaofang Jia, Kosuke Minami, Koichiro Uto, Alice Chinghsuan Chang, Jonathan P. Hill, Jun Nakanishi, Katsuhiko Ariga

    ADVANCED MATERIALS   32 ( 4 )  2020.01  [Refereed]

     View Summary

    There is a growing interest in the development of dynamic adaptive biomaterials for regulation of cellular functions. However, existing materials are limited to two-state switching of the presentation and removal of cell-adhesive bioactive motifs that cannot emulate the native extracellular matrix (ECM) in vivo with continuously adjustable characteristics. Here, tunable adaptive materials composed of a protein monolayer assembled at a liquid-liquid interface are demonstrated, which adapt dynamically to cell traction forces. An ultrastructure transition from protein monolayer to hierarchical fiber occurs through interfacial jamming. Elongated fibronectin fibers promote formation of elongated focal adhesion structures, increase focal adhesion kinase activation, and enhance neuronal differentiation of stem cells. Cell traction force results in spatial rearrangement of ECM proteins, which feeds back to alter stem cell fate. The reported biomimetic adaptive liquid interface enables dynamic control of stem cell behavior and has potential translational applications.

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  • A facile assay of epithelial-mesenchymal transition based on cooperativity quantification of cellular autonomous motions.

    Yamamoto S, Miyama T, Komoda T, Sugawara M, Nonomura M, Nakanishi J

    Analytical sciences   36 ( 2 ) 263 - 268  2019.10  [Refereed]

     View Summary

    Epithelial-mesenchymal transition (EMT), a qualitative change in cell migration behavior during cancer invasion and metastasis, is becoming a new target for anticancer drugs. Therefore, it is crucial to develop in vitro assays for the evaluation of the abilities of drug candidates to control EMT progression. We herein report on a method for the quantification of the EMT based on particle image velocimetry and correlation functions. The exponential fitting of the correlation curve gives an index (lambda), which represents transforming growth factor (TGF)-beta 1-induced EMT progression and its suppression by inhibitors. Moreover, real-time monitoring of the lambda value illustrates a time-dependent EMT progressing process, which occurs earlier than the bio-chemical changes in an EMT marker protein expression. The results demonstrate the usefulness of the present method for kinetic studies of EMT progression as well as EMT inhibitor screening.

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  • Preparation of a Series of Photoresponsive Polymersomes Bearing Photocleavable a 2-nitrobenzyl Group at the Hydrophobic/Hydrophilic Interfaces and Their Payload Releasing Behaviors

    Yamamoto, Yamada, Kubo, Sakurai, Yamaguchi, Nakanishi

    Polymers   11 ( 8 ) 1254 - 1254  2019.07  [Refereed]

     View Summary

    <jats:p>In this study, the structure-function relationships of a series of polymersomes composed of well-defined amphiphilic diblock copolymers were investigated. The building blocks were synthesized by clicking hydrophobic polymers, synthesized beforehand, and commercially available poly(ethylene glycol) with photocleavable 2-nitrobenzyl compounds bearing alkyne and maleimide functionalities. All of the tested polymersomes preserved their hollow structures even after sufficient photoirradiation. Nevertheless, the release rate of an entrapped anionic fluorophore was highly dependent on the molecular weight and the type of hydrophobic polymer, as well as on the presence or absence of the charged end groups. Moreover, the polymersomes with a 2-nitrosobenzyl photolysis residue within the hydrophobic shells exhibited photo-induced payload release after complete photolysis. It was concluded that the payload release was mediated by photo-induced permeability changes of the hydrophobic shells rather than the decomposition of their overall structures.</jats:p>

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    9
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  • Synthesis of Poly(N-vinylpyrrolidone)-Based Polymer Bottlebrushes by ATRPA and RAFT Polymerization: Toward Drug Delivery Application

    Jun Nakanishi

    Polymers   11 ( 6 )  2019.06  [Refereed]

     View Summary

    <jats:p>Atom transfer radical polyaddition (ATRPA) was utilized herein to synthesize a specific functional polyester. We conducted ATRPA of 4-vinylbenzyl 2-bromo-2-phenylacetate (VBBPA) inimer and successfully obtained a linear type poly(VBBPA) (PVBBPA) polyester with benzylic bromides along the backbone. To obtain a novel amphiphilic polymer bottlebrush, however, the lateral ATRP chain extension of PVBBPA with N-vinyl pyrrolidone (NVP) met the problem of quantitative dimerization. By replacing the bromides to xanthate moieties efficiently, we thus observed a pseudo linear first order reversible addition–fragmentation chain transfer (RAFT) polymerization to obtain novel poly(4-vinylbenzyl-2-phenylacetate)-g-poly(NVP) (PVBPA-g-PNVP) amphiphilic polymer bottlebrushes. The critical micelle concentration (CMC) and particle size of the amphiphilic polymer bottlebrushes were characterized by fluorescence spectroscopy, dynamic light scattering (DLS), and scanning electron microscopy (SEM) (CMCs &lt; 0.5 mg/mL; particle sizes = ca. 100 nm). Toward drug delivery application, we examined release profiles using a model drug of Nile red at different pH environments (3, 5, and 7). Eventually, low cytotoxicity and well cell uptake of the Madin-Darby Canine Kidney Epithelial (MDCK) for the polymer bottlebrush micelles were demonstrated.</jats:p>

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  • Photoactivatable Hydrogel Interfaces for Resolving the Interplay of Chemical, Mechanical, and Geometrical Regulation of Collective Cell Migration

    Shota Yamamoto, Kei Okada, Naoki Sasaki, Alice Chinghsuan Chang, Kazuo Yamaguchi, Jun Nakanishi

    Langmuir   35 ( 23 ) 7459 - 7468  2019.06  [Refereed]

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  • Nanaomycin I and J: New nanaomycins generated by mycothiol-mediated compounds from "Streptomyces rosa subsp. notoensis" OS-3966.

    Hirotaka Matsuo, Yoshihiko Noguchi, Akira Také, Jun Nakanishi, Katsumi Shigemura, Toshiaki Sunazuka, Yōko Takahashi, Satoshi Ōmura, Takuji Nakashima

    Journal of bioscience and bioengineering   127 ( 5 ) 549 - 553  2019.05  [Refereed]  [Domestic journal]

     View Summary

    Two new nanaomycin analogs, nanaomycin I and J, were isolated from a cultured broth of an actinomycete strain, "Streptomyces rosa subsp. notoensis" OS-3966. In our previous study, we have confirmed the occurrence of nanaomycin I (m/z = 482 [M + H]+) that lacks a pseudo-disaccharide from the mycothiol of nanaomycin H under same culture condition. In this study, to confirm the structure of nanaomycin I, the strain "S. rosa subsp. notoensis" OS-3966 was re-cultured and the target compound with m/z = 482 [M + H]+ was isolated. Furthermore, we discovered another new analog, designated as nanaomycin J in isolating nanaomycin I. The NMR analyses revealed that the structures of nanaomycin I and J are N-acetylcysteine S-conjugates without a pseudo-disaccharide and N-acetylcysteine S-conjugates without a myo-inositol of nanaomycin H, respectively. The relative configurations of the tetrahydropyrane moiety of nanaomycin I and J were determined by rotating-frame overhauser effect spectroscopy (ROESY) analysis. Absolute configurations of the N-acetylcysteine moiety of nanaomycin I and J were determined by advanced Marfey's analyses for acid hydrolysis of de-sulfurized nanaomycin I and J with Raney nickel. Nanaomycin I and J showed moderate cytotoxicity against several human tumor cell lines.

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  • Epidermal growth factor-nanoparticle conjugates change the activity from anti-apoptotic to pro-apoptotic at membrane rafts

    Shota Yamamoto, Yoshifumi Iwamaru, Yoshihisa Shimizu, Yoshibumi Ueda, Moritoshi Sato, Kazuo Yamaguchi, Jun Nakanishi

    Acta Biomaterialia   88   383 - 391  2019.04  [Refereed]  [International journal]

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    The proliferation epidermal growth factor (EGF) is known to acquire contradictory apoptotic activities upon conjugation with gold nanoparticles (GNPs) through hitherto unknown mechanisms. Here, we identified an essential role of membrane rafts in the drastic activity switching of EGF-GNPs through the following intracellular signaling. (1) In contrast to the rapid diffusion of activated EGF receptor after the soluble EGF stimulation, the receptor is confined within membrane rafts upon binding to the EGF-GNPs. (2) This initial receptor confinements switch its endocytosis process from normal clathrin-mediated endocytosis to caveolin-mediated one, changing the phosphorylation dynamics of essential downstream kinases, i.e., extracellular signal-regulated kinase and AKT. Importantly, the destruction of membrane rafts by β-cyclodextrin reversed this trafficking and signaling, restoring EGF-GNPs to lost anti-apoptotic property. These results reveal the importance of GNP-mediated signal condensation at membrane rafts in conferring the unique apoptotic activity on EGF-nanoparticle conjugates. STATEMENT OF SIGNIFICANCE: Epidermal growth factor (EGF) is a small secretory protein that induces cell proliferation upon binding to its receptor existed on cellular plasma membranes. One interesting feature of the protein in the nanobiology field is, its acquisition of apoptosis-inducing (cellular suicide) activity rather than proliferative one upon conjugation to gold nanoparticles through hitherto unknown mechanisms. Here, we identified the involvement of membrane rafts, plasma membrane nanodomains enriched with cholesterol, in the apoptosis processes by changing the receptor trafficking and downstream signal transduction pathways. Moreover, the destruction of lipid rafts restored the EGF-nanoparticle conjugates with lost anti-apoptotic activity. These finding highlight potential applications of EGF-nanoparticle conjugates to cancer therapy, as the EGF receptor are highly expressed in cancer cells.

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  • An Application of Photoactivatable Substrate for the Evaluation of Epithelial-mesenchymal Transition Inhibitors.

    Jun Nakanishi, Kenji Sugiyama, Hirotaka Matsuo, Yoko Takahashi, Satoshi Omura, Takuji Nakashima

    Analytical sciences : the international journal of the Japan Society for Analytical Chemistry   35 ( 1 ) 65 - 69  2019.01  [Refereed]  [Domestic journal]

     View Summary

    Epithelial-mesenchymal transition (EMT), phenotypic changes in cell adhesion and migration, is involved in cancer invasion and metastasis, hence becoming a target for anti-cancer drugs. In this study, we report a method for the evaluation of EMT inhibitors by using a photoactivatable gold substrate, which changes from non-cell-adhesive to cell-adhesive in response to light. The method is based on the geometrical confinement of cell clusters and the subsequent migration induction by controlled photoirradiation of the substrate. As a proof-of-concept experiment, a known EMT inhibitor was successfully evaluated in terms of the changes in cluster area or leader cell appearance, in response to biochemically and mechanically induced EMT. Furthermore, an application of the present method for microbial secondary metabolites identified nanaomycin H as an EMT inhibitor, potentially killing EMTed cells in disseminated conditions. These results demonstrate the potential of the present method for screening new EMT inhibitors.

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    9
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  • Modulation of mesenchymal stem cells mechanosensing at fluid interfaces by tailored self-assembled protein monolayers

    Xiaofang Jia, Kosuke Minami, Koichiro Uto, Alice Chinghsuan Chang, Jonathan P Hill, Takeshi Ueki, Jun Nakanishi, Katsuhiko Ariga

    Small   15 ( 5 ) 1804640 - 1804640  2019.01  [Refereed]

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  • Photoactivatable substrates for systematic study of the impact of an extracellular matrix ligand on appearance of leader cells in collective cell migration

    Shimaa A. Abdellatef, Jun Nakanishi

    Biomaterials   169   72 - 84  2018.07  [Refereed]

     View Summary

    Epithelial cells migrate as multicellular units. The directionality and speed of these units are determined by actively moving leader cells. It is important to understand how external cues affect the appearance of these leader cells in physiological and pathological processes. However, the impact of extracellular matrices (ECMs) is still controversial, because physically-adsorbed ECM proteins are amenable to protein remodeling, and uncontrolled cluster geometry can vary migration phenotypes. Here, we demonstrate a photoactivatable substrate, which we used to study the impact of a cyclic Arg-Gly-Asp (cRGD) ligand on leader cell formation in MDCK cells. This robust platform allowed us to investigate the effect of cRGD density on leader cell formation, in any given cluster geometry, with minimized ECM remodeling. Our results show a biphasic response of leader cell appearance upon reducing the surface cRGD density. The increase, in leader cell appearance, within the higher density range, is not only associated with the weakening of circumferential actomyosin belts, but also reduction of cellular mechanical tension and intercellular junctional E-cadherin. These results indicate that cRGD-mediated cell-ECM interactions positively regulate mechanical and biochemical coupling within cell clusters
    both are critical for the coordination of cell collectives and eventual reduction in the appearance of leader cells.

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    17
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  • Suppression of Myogenic Differentiation of Mammalian Cells Caused by Fluidity of a Liquid-Liquid Interface

    Kosuke Minami, Taizo Mori, Waka Nakanishi, Narumi Shigi, Jun Nakanishi, Jonathan P. Hill, Makoto Komiyama, Katsuhiko Ariga

    ACS APPLIED MATERIALS & INTERFACES   9 ( 36 ) 30553 - 30560  2017.09  [Refereed]

     View Summary

    There is growing evidence to suggest that the prevailing physical microenvironment and mechanical stress I I regulate cellular functions, including adhesion, proliferation, and differentiation. Moreover, the physical microenvironment determines the stem-cell lineage depending on stiffness of the substrate relative to biological tissues as well as the stress relaxation properties of the viscoelastic substrates used for cell culture. However, there is little known regarding the biological effects of a fluid substrate, where viscoelastic stress is essentially absent. Here, we demonstrate the regulation of myogenic differentiation on fluid substrates by using a liquid liquid interface as a scaffold. C2C12 myoblast cells were cultured using water-perfluorocarbon (PFC) interfaces as the fluid microenvironment. We found that, for controlled in vitro culture at water PFC interfaces, expression of myogenin, myogenic regulatory factors (MRF) family gene, is remarkably attenuated even when myogenic differentiation was induced by reducing levels of growth factors, although MyoD was expressed at the usual level (MyoD up-regulates myogenin under an elastic and/or viscoelastic environment). These results strongly suggest that this unique regulation of myogenic differentiation can be attributed to the fluid microenvironment of the interfacial culture medium. This interfacial culture system represents a powerful tool for investigation of the mechanisms by which physical properties regulate cellular adhesion and proliferation as well as their differentiation. Furthermore, we successfully transferred the cells cultured at such interfaces using Langmuir-Blodgett (LB) techniques. The combination of the interfacial culture system with the LB approach enables investigation of the effects of mechanical compression on cell functions.

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  • Photoactivatable Substrates: A Material-Based Approach for Dissecting Cell Migration

    Jun Nakanishi

    CHEMICAL RECORD   17 ( 6 ) 611 - 621  2017.06  [Refereed]

     View Summary

    Photoactivatable substrates, which show changes in surface cell adhesiveness in response to photoirradiation, are promising platforms for cell manipulation with high spatiotemporal resolution. In addition to having applications in cell and tissue engineering, these materials are unique tools for basic biological sciences research, and they complement conventional genetic engineering technologies. One of the most useful applications is in the study of cell migration, which occurs in various physiological and pathological processes. In this personal account, I provide a brief overview of the development of photoactivatable substrates and their applications, highlighting in particular the contributions of our research group to collective cell migration studies. This material-based approach is useful for dissecting the molecular biological and mechanobiological aspects of the regulatory mechanisms in the cellular social activities.

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  • Nanaomycin H: A new nanaomycin analog

    Takuji Nakashima, Toru Kimura, Rei Miyano, Hirotaka Matsuo, Tomoyasu Hirose, Aoi Kimishima, Kenichi Nonaka, Masato Iwatsuki, Jun Nakanishi, Yoko Takahashi, Satoshi Omura

    JOURNAL OF BIOSCIENCE AND BIOENGINEERING   123 ( 6 ) 765 - 770  2017.06  [Refereed]

     View Summary

    Physicochemical screening identified a new nanaomycin analog, nanaomycin H, which was isolated from a culture broth of Streptomyces rosa subsp. notoensis OS-3966. This microorganism is already known to produce seven nanaomycin compounds, (nanaomycin A to G). Structural elucidation of nanaomycin H showed it to be a pyranonaphthoquinone with a mycothiol moiety. A N-acetylcysteine S-conjugate of nanaomycin H, without oc-glucosamine linked to myo-inositol moiety, mercapturic acid derivative, was also detected in the same culture broth. Mercapturic acid derivatives of secondary metabolites are known to be produced for xenobiotic metabolism outside microbial cells. Mycothiol acts as a detoxifier to help prevent cell damage from factors such as oxidative stress. The production of O-2(-). generated by reduction of nanaomycin A is correlated with antibacterial activity. Mycothiol-containing nanaomycin H proved to be markedly decreased in O-2(-). and did not express any notable antimicrobial activity. It is suggested that nanaomycin H is produced in the detoxification process. (C) 2017, The Society for Biotechnology, Japan. All rights reserved.

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  • "New Analytical Methodology and Materials for Mechanobiology"

    Jun Nakanishi, Mitsuhiro Ebara

    ANALYTICAL SCIENCES   32 ( 11 ) 1139 - 1139  2016.11  [Refereed]

  • Facile Preparation of Photoactivatable Surfaces with Tuned Substrate Adhesiveness

    Yoshihisa SHIMIZU, Masao KAMIMURA, Shota YAMAMOTO, Shimaa A. ABDELLATEF, Kazuo YAMAGUCHI, Jun NAKANISHI

    ANALYTICAL SCIENCES   32 ( 11 ) 1183 - 1188  2016.11  [Refereed]

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  • Reduced adhesive ligand density in engineered extracellular matrices induces an epithelial-mesenchymal-like transition

    Saw Marlar, Shimaa A. Abdellatef, Jun Nakanishi

    ACTA BIOMATERIALIA   39 ( NA ) 106 - 113  2016.07  [Refereed]

     View Summary

    A synergistic effect of biochemical and mechanical cues emanating from the extracellular matrix (ECM) on inducing malignant transformation of epithelial cells has been observed recently. However, the effect of quantitative changes in biochemical stimuli on cell phenotype, without changes in ECM component and rigidity, remains unknown. To determine this effect, we grew Madin-Darby canine kidney epithelial cells (MDCK) on gold surfaces immobilized with varying densities of cyclic arginine-glycine-aspartate (cRGD) peptide and analyzed cell morphology, cell migration, cytoskeletal organization, and protein expression. Cells grown on a surface presenting a higher density of cRGD displayed an epithelial morphology and grew in clusters, while those grown on a diluted cRGD surface transformed into an elongated, fibroblast-like form with extensive scattering. Time-lapse imaging of cell clusters grown on the concentrated cRGD surface revealed collective migration with intact cell-cell contacts accompanied by the development of cortical actin. In contrast, cells migrated individually and formed stress fibers on the substrate with sparse cRGD. These data point towards transdifferentiation of epithelial cells to mesenchymal-like cells when plated on a diluted cRGD surface. Supporting this hypothesis, immunofluorescence microscopy and western blot analysis revealed increased membrane localization and total expression of N-cadherin and vimentin in cells undergoing mesenchymal-like transition. Taken together, these results suggest a possible role of decreased biochemical stimuli from the ECM in regulating epithelial phenotype switching.
    Statement of Significance
    Epithelial-mesenchymal transition (EMT) is a process where adherent epithelial cells convert into individual migratory mesenchymal phenotype. It plays an important role both in physiological and pathological processes. Recent studies demonstrate that the program is not only governed by soluble factors and gene expressions, but also modulated by biochemical and mechanical cues in ECMs. In this study, we developed chemically defined surfaces presenting controlled ECM ligand densities and studied their impact on the EMT progression. Morphological and biochemical analyses of epithelial cells cultured on the surfaces indicate the cells undergo an EMT-like transition on the diluted cRGD surface while retaining epithelial characteristics on the cRGD-rich substrate, suggesting an important role of the ECM ligand density in epithelial phenotype switching. (C) 2016 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

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  • What are the emerging concepts and challenges in NANO? Nanoarchitectonics, hand-operating nanotechnology and mechanobiology

    Katsuhiko Ariga, Kosuke Minami, Mitsuhiro Ebara, Jun Nakanishi

    POLYMER JOURNAL   48 ( 4 ) 371 - 389  2016.04  [Refereed]

     View Summary

    Most of us may mistakenly believe that sciences within the nano regime are a simple extension of what is observed in micrometer regions. We may be misled to think that nanotechnology is merely a far advanced version of microtechnology. These thoughts are basically wrong. For true developments in nanosciences and related engineering outputs, a simple transformation of technology concepts from micro to nano may not be perfect. A novel concept, nanoarchitectonics, has emerged in conjunction with well-known nanotechnology. In the first part of this review, the concept and examples of nanoarchitectonics will be introduced. In the concept of nanoarchitectonics, materials are architected through controlled harmonized interactions to create unexpected functions. The second emerging concept is to control nano-functions by easy macroscopic mechanical actions. To utilize sophisticated forefront science in daily life, high-tech-driven strategies must be replaced by low-tech-driven strategies. As a required novel concept, hand-operation nanotechnology can control nano and molecular systems through incredibly easy action. Hand-motion-like macroscopic mechanical motions will be described in this review as the second emerging concept. These concepts are related bio-processes that create the third emerging concept, mechanobiology and related mechano-control of bio-functions. According to this story flow, we provide some incredible recent examples such as atom-level switches, operation of molecular machines by hand-like easy motions, and mechanical control of cell fate. To promote and activate science and technology based on these emerging concepts in nanotechnology, the contribution and participation of polymer scientists are crucial. We hope that some readers would have interests within what we describe.

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  • Photoactivatable compliant substrates for precise analysis of mechanobiological regulation in collective cell migration

    Jun Nakanishi, Masao Kamimura, Kazuo Yamaguchi

    Frontiers in Bioengineering and Biotechnology Conference Abstract: 10th World Biomaterials Congress    2016.03  [Refereed]

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  • Cell Manipulation Technologies

    Jun Nakanishi

    Biomaterials Nanoarchitectonics     115 - 135  2016.02  [Refereed]

     View Summary

    Activities of cells are dependent on extracellular niches, which change quite dynamically. Dynamic substrates whose chemical and/or physical properties can be controlled by an external stimulus are useful to resolve how cells respond to such dynamic environmental changes. Moreover, they are useful for cell manipulations, such as heterotypic cell coculturing, cell migration induction, and cell sheet harvesting. We have developed for the first time a dynamic substrate based on the photocleavage reaction of the 2-nitrobenzyl group. One of the biggest advantages of the photochemical approach is its high spatiotemporal resolution. However, there is a lot of room for innovation to improve the switching efficiency and to expand the time window of its usage. This chapter discusses the developmental history of our photoactivatable substrates. Readers will notice how it is technically challenging to meet these two requirements on a single substrate. We also briefly refer to their applications to cell migration studies.

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  • Dynamic control of cell adhesion on a stiffness-tunable substrate for analyzing the mechanobiology of collective cell migration

    Masao Kamimura, Michiko Sugawara, Shota Yamamoto, Kazuo Yamaguchi, Jun Nakanishi

    BIOMATERIALS SCIENCE   4 ( 6 ) 933 - 937  2016  [Refereed]

     View Summary

    A method was developed for photocontrolling cell adhesion on a gel substrate with defined mechanical properties. Precise patterning of geometrically controlled cell clusters and their migration induction became possible by spatiotemporally controlled photo-irradiation of the substrate. The clusters exhibited unique collective motion that depended on substrate stiffness and cluster geometry.

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  • Estradiol-tethered micropatterned surfaces for the study of estrogenic non-genomic pathways

    B. Qi, Y. Shimizu, J. Nakanishi, F. M. Winnik

    CHEMICAL COMMUNICATIONS   52 ( 65 ) 10056 - 10059  2016  [Refereed]

     View Summary

    Besides its well-known hormonal effects initiated in the nucleus, estradiol (E2) also activates non-nuclear pathways through interactions with receptors located on the cell plasma membrane. Micropatterned substrates consisting of gold dots bearing tethered E2 distributed on a cell-adhesive substrate were prepared and shown to trigger specifically E2 non-genomic effects in cells grown on the substrates.

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    3
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  • Development and Characterization of Protein-gold-nanoparticle Conjugates bearing Photocleavable Polymers

    Shota Yamamoto, Jun Nakanishi, Kazuo Yamaguchi

    JOURNAL OF PHOTOPOLYMER SCIENCE AND TECHNOLOGY   28 ( 2 ) 269 - 272  2015  [Refereed]

  • Facile preparation of a photoactivatable surface on a 96-well plate: a versatile and multiplex cell migration assay platform

    Masao Kamimura, Olivia Scheideler, Yoshihisa Shimizu, Shota Yamamoto, Kazuo Yamaguchi, Jun Nakanishi

    PHYSICAL CHEMISTRY CHEMICAL PHYSICS   17 ( 21 ) 14159 - 14167  2015  [Refereed]

     View Summary

    Cell migration is an essential cellular activity in various physiological and pathological processes, such as wound healing and cancer metastasis. Therefore, in vitro cell migration assays are important not only for fundamental biological studies but also for evaluating potential drugs that control cell migration activity in medical applications. In this regard, robust control over cell migrating microenvironments is critical for reliable and quantitative analysis as cell migration is highly dependent upon the microenvironments. Here, we developed a facile method for making a commercial glass-bottom 96-well plate photoactivatable for cell adhesion, aiming to develop a versatile and multiplex cell migration assay platform. Cationic poly-D-lysine was adsorbed to the anionic glass surface via electrostatic interactions and, subsequently, functionalized with poly(ethylene glycol) (PEG) bearing a photocleavable reactive group. The initial PEGylated surface is non-cell-adhesive. However, upon near-ultraviolet (UV) irradiation, the photorelease of PEG switches the surface from non-biofouling to cell-adhesive. With this platform, we assayed cell migration in the following procedure: (1) create cell-attaching regions of precise geometries by controlled photo-irradiation, (2) seed cells to allow them to attach selectively to the irradiated regions, (3) expose UV light to the remaining PEGylated regions to extend the cell-adhesive area, (4) analyse cell migration using microscopy. Surface modification of the glass surface was characterized by zeta-potential and contact angle measurements. The PEGylated surface showed cell-resistivity and became cell-adhesive upon releasing PEG by near-UV irradiation. The method was applied for parallelly evaluating the effect of model drugs on the migration of epithelial MDCK cells in the multiplexed platform. The dose-response relationship for cytochalasin D treatment on cell migration behavior was successfully evaluated with high reproducibility. Interestingly, the impact of blebbistatin on cell migration was dependent upon the widths of the migrating regions, resulting in both cases of migration acceleration and deceleration. These results clearly demonstrate that the cellular response to certain drugs is highly affected by their migrating geometries. Therefore, the obtained novel photoactivatable 96-well plate serves as a useful high-throughput platform for the identification of drug candidates that have an effect on cell migration behavior.

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  • Hippo Pathway Effectors Control Cardiac Progenitor Cell Fate by Acting as Dynamic Sensors of Substrate Mechanics and Nanostructure

    Diogo Mosqueira, Stefania Pagliari, Koichiro Uto, Mitsuhiro Ebara, Sara Romanazzo, Carmen Escobedo-Lucea, Jun Nakanishi, Akiyoshi Taniguchi, Ornella Franzese, Paolo Di Nardo, Marie Jose Goumans, Enrico Traversa, Perpetua Pinto-do-O, Takao Aoyagi, Giancarlo Forte

    ACS NANO   8 ( 3 ) 2033 - 2047  2014.03  [Refereed]

     View Summary

    Stem cell responsiveness to extracellular matrix (ECM) composition and mechanical cues has been the subject of a number of investigations so far, yet the molecular mechanisms underlying stem cell mechano-biology still need full clarification. Here we demonstrate that the paralog proteins YAP and TAZ exert a crucial role in adult cardiac progenitor cell mechano-sensing and fate decision. Cardiac progenitors respond to dynamic modifications in substrate rigidity and nanopattern by promptly changing YAP/TAZ intracellular localization. We identify a novel activity of YAP and TAZ in the regulation of tubulogenesis in 3D environments and highlight a role for YAP/TAZ in cardiac progenitor proliferation and differentiation. Furthermore, we show that YAP/TAZ expression is triggered in the heart cells located at the infarct border zone. Our results suggest a fundamental role for the YAP/TAZ axis in the response of resident progenitor cells to the modifications in microenvironment nanostructure and mechanics, thereby contributing to the maintenance of myocardial homeostasis in the adult heart. These proteins are indicated as potential targets to control cardiac progenitor cell fate by materials design.

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  • A Photoactivatable Nanopatterned Substrate for Analyzing Collective Cell Migration with Precisely Tuned Cell-Extracellular Matrix Ligand Interactions

    Yoshihisa Shimizu, Heike Boehm, Kazuo Yamaguchi, Joachim P. Spatz, Jun Nakanishi

    PLOS ONE   9 ( 3 )  2014.03  [Refereed]

     View Summary

    Collective cell migration is involved in many biological and pathological processes. Various factors have been shown to regulate the decision to migrate collectively or individually, but the impact of cell-extracellular matrix (ECM) interactions is still debated. Here, we developed a method for analyzing collective cell migration by precisely tuning the interactions between cells and ECM ligands. Gold nanoparticles are arrayed on a glass substrate with a defined nanometer spacing by block copolymer micellar nanolithography (BCML), and photocleavable poly(ethylene glycol) (Mw = 12 kDa, PEG12K) and a cyclic RGD peptide, as an ECM ligand, are immobilized on this substrate. The remaining glass regions are passivated with PEG2K-silane to make cells interact with the surface via the nanoperiodically presented cyclic RGD ligands upon the photocleavage of PEG12K. On this nanostructured substrate, HeLa cells are first patterned in photo-illuminated regions, and cell migration is induced by a second photocleavage of the surrounding PEG12K. The HeLa cells gradually lose their cell-cell contacts and become disconnected on the nanopatterned substrate with 10-nm particles and 57-nm spacing, in contrast to their behavior on the homogenous substrate. Interestingly, the relationship between the observed migration collectivity and the cell-ECM ligand interactions is the opposite of that expected based on conventional soft matter models. It is likely that the reduced phosphorylation at tyrosine-861 of focal adhesion kinase (FAK) on the nanopatterned surface is responsible for this unique migration behavior. These results demonstrate the usefulness of the presented method in understanding the process of determining collective and non-collective migration features in defined micro-and nano-environments and resolving the crosstalk between cell-cell and cell-ECM adhesions.

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  • Switchable Substrates for Analyzing and Engineering Cellular Functions

    Jun Nakanishi

    CHEMISTRY-AN ASIAN JOURNAL   9 ( 2 ) 406 - 417  2014.02  [Refereed]

     View Summary

    Cellular activity is highly dependent on the extracellular environment, which is composed of surrounding cells and extracellular matrices. This focus review summarizes recent advances in chemically and physically engineered switchable substrates designed to control such cellular microenvironments by application of an external stimulus. Special attention is given to their molecular design, switching strategies, and representative examples for bioanalytical and biomedical applications.

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  • Dynamic Photochemical Silane Micropatterning

    Jun Nakanishi

    MICROPATTERNING IN CELL BIOLOGY, PT B   120   117 - 129  2014  [Refereed]

     View Summary

    This protocol describes a method for dynamic patterning cells on a glass coverslip. The glass substrate is first functionalized with photocleavable silane bearing 2-nitrobenzyl group, thereafter a cell-repellent polymer, poly(ethylene glycol) (PEG), is conjugated. Upon absorption of near-UV light, the PEG is cleaved from he surface, changing the surface from non-cell-adhesive to cell-adhesive. The method allows not only for spatially controlling cell attachment on the substrate (conventional patterning), but also inducing cell migration or coculturing heterotypic cells (dynamic patterning). Furthermore, it should be emphasized that the surface is compatible with fluorescence imaging in a high-resolution inverted objective setup as it is composed of a normal glass coverslip functionalized with the thin layers. In this chapter, I describe the procedure for the synthesis of the silane molecule, the preparation of the photoactivatable surface, and its application for dynamic cell patterning.

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  • Dynamic Substrate Based on Photocleavable Poly(ethylene glycol): Zeta Potential Determines the Capability of Geometrical Cell Confinement

    Shingo Kaneko, Kazuo Yamaguchi, Jun Nakanishi

    LANGMUIR   29 ( 24 ) 7300 - 7308  2013.06  [Refereed]

     View Summary

    Dynamic substrates whose cell adhesiveness changes in response to an external stimulus are useful not only for patterning cells in various geometries but also for inducing cell migration or arraying heterotypic cells. The requirements for such applications are high switching efficiency in cell adhesiveness and long-term persistence of the created cellular patterns. In this study, we prepared a dynamic substrate bearing photocleavable poly(ethylene glycol) (PEG) and examined the effect of the surface PEG density and the charge of cationic base materials on the above-mentioned key requirements. An amino-terminated substrate with a certain amino group density and charge was functionalized with photocleavable PEG5K, with and without subsequent backfilling of photocleavable PEG2K. The PEG chains made the surface non-cell-adhesive, but subsequent near-UV irradiation of the substrate induced photocleavage of the PEG, eventually making the surface cell-adhesive. The substrates were analyzed by atomic force microscopy, contact angle measurements, ellipsometry, and zeta potential measurements, complemented with protein adsorption observations. Although the density of amino group in the base material affected both the grafting efficiency of the backfilling PEG and the electrokinetic potential mainly in the positive range, the latter mainly determined the protein- and cell-repelling abilities of the substrates. Furthermore, varying the surface compositions had almost no effect on the switching efficiency in the early stage of the culture, but it became more significant after culturing cells for a longer time; the cells fouled the nonirradiated PEGylated regions earlier on the surfaces with higher positive zeta potentials. These results indicate that the zeta potential is an essential factor in the long-term persistence of cellular patterns on photoactivatable substrates. This study not only provides a recipe for the development of a dynamic substrate with an adequate time frame but also clarifies how the interfacial nanoarchitectures, composed of the nanometer-scale PEG brushes and charged base materials, affect the biocompatibility.

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  • Photoactivatable Substrates for Analyzing Cell Migration

    Jun Nakanishi

    JOURNAL OF PHOTOPOLYMER SCIENCE AND TECHNOLOGY   26 ( 2 ) 159 - 160  2013  [Refereed]

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  • Colorimetric microchip assay using our own whole blood collected by a painless needle for home medical care

    Madoka Takai, Masao Nagai, Yuji Morimoto, Kunihiko Sasao, Akio Oki, Jun Nakanishi, Hiromichi Inokuchi, Chia-Hsien Chang, Jun Kikuchi, Hiroki Ogawa, Yasuhiro Horiike

    ANALYST   138 ( 21 ) 6469 - 6476  2013  [Refereed]

     View Summary

    We have developed a colorimetric measurement chip that measures triglycerides, total cholesterol, and high-density lipoprotein in 6 mL of whole blood collected with a painless needle. The chip can be used by patients to self-monitor certain health conditions at home. This chip contains a sharp 150 mm diameter stainless steel (SUS) needle that collects blood painlessly. The chip consists of three layers of injection-molded poly(methyl methacrylate) bonded together with two double-sided tapes. Two commercial reagents are used, and the volume ratio of plasma to reagent is doubled from the reagent specification to reduce the optical absorption length (and chip mass) by half. Centrifugal force separates the plasma from the blood, and then weighs out and mixes the plasma and reagents. A zigzag channel allows mixing of the plasma with the reagents mainly by vortex motion due to the centrifugal force generated at the corners of the channel. The measured values correlated well with conventionally tested values.

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  • Tuning the Properties and Functions of 17 beta-Estradiol-polysaccharide Conjugates in Thin Films: Impact of Sample History

    Zhimei Miao, Piotr Kujawa, Yiu-Ting Richard Lau, Sayaka Toita, Baowen Qi, Jun Nakanishi, Isabelle Cloutier, Jean-Francois Tanguay, Francoise M. Winnik

    BIOMACROMOLECULES   13 ( 12 ) 4098 - 4108  2012.12  [Refereed]

     View Summary

    In addition to its role in the regulation of sex-related processes, 17 beta-estradiol (E2) participates in the prevention and treatment of cardiovascular diseases via nongenomic pathways mediated by estrogen receptors (ER-alpha) located in the cell membrane. To achieve specific nongenomic activity of E2, we linked E2 (4.4 mol %) to chitosan-phosphorylcholine (CH-PC) (20 mol % PC). Injections of ER-alpha solutions (S to 100 nmol L-1) over rehydrated CH-PC-E2 thin films led to permanent adsorption of ER-alpha to the film surface, as detected by quartz crystal microbalance with dissipation (QCM-D). However, ER-alpha did not bind onto CH-PC-E2 films formed in situ and never dried. X-ray photoelectron spectroscopy (XPS) analysis of spin-cast CH-PC-E2 films revealed significant E2 enrichment of the topmost section of the film, attributed to the preferential migration of E2 toward the film/air interface upon drying. Mechanical analysis of CH-PC-E2 films in the frequency domain probed by QCM-D indicated that rehydrated films behave as an entangled network with junction points formed by self-assembly of hydrophobic E2 moieties and by ion pairing among PC groups, whereas films formed in situ are entangled polymer solutions with temporary junctions. The structural analysis presented offers useful guidelines for the study of amphiphilic biomacromolecules designed for therapeutic use as thin films.

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  • Spatiotemporally controlled navigation of neurite outgrowth in sequential steps on the dynamically photo-patternable surface

    Yoshikuni Edagawa, Jun Nakanishi, Kazuo Yamaguchi, Naoya Takeda

    COLLOIDS AND SURFACES B-BIOINTERFACES   99   20 - 26  2012.11  [Refereed]

     View Summary

    A great number of the neurites interconnect neuronal cells in a brain to form the complicate neural circuits, whose structures are dynamically changed with changing the numbers and destinations of the neurites. Fabricating a model of neural network in vitro is one of the promising methods to precisely assay the signal transmission and processing within the circuit as well as to examine behaviors of individual cells. In this study, aiming to fabricate the dynamically alterable neural network in vitro, the chemically modified surface with the photo-reactive self-assembled monolayer was applied to navigate the neurite outgrowth activities of differentiated PC12 cell in the spatially and temporally controlled manner. Numbers of the cell soma were effectively adhered and simultaneously arrayed according to the 25 mu m square patterns, which were easily fabricated with a single shot of the 365-nm ultraviolet (UV) irradiation and pre-coated with the extracellular matrix (ECM) protein. Narrow neurites were successively guided along the 5 mu m line patterns drawn on the surface by stepwise irradiation of the UV light in the intended designs and at appropriate timing. Sprouting number, elongating direction, bending, branching, and formation of autapse-like structure were controllable. The rate of neurite elongation was dependent on the ECM species, that were pre-coated beneath the cell soma, suggesting the ECM stimulated the basal side of the cell soma and affected the outgrowth process of the neurite. Navigation of the neurite elongation along the microline pattern for a primary rat brain cortex neuron was also achieved. (C) 2011 Elsevier B.V. All rights reserved.

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  • Switchable adhesive substrates: Revealing geometry dependence in collective cell behavior

    Claudio G. Rolli, Hidekazu Nakayama, Kazuo Yamaguchi, Joachim P. Spatz, Ralf Kemkemer, Jun Nakanishi

    BIOMATERIALS   33 ( 8 ) 2409 - 2418  2012.03  [Refereed]

     View Summary

    Collective cell migration plays a major role in cancer metastasis and wound healing, therefore, several in vitro assays for studying such behavior have been developed. Using photoswitchable surfaces, we studied collective cell expansion behavior from initially precisely controlled adhesive patterns. A non-adhesive poly(ethylene glycol) (PEG) layer is conjugated to a glass coverslip via 2-nitrobenzyl groups, which cleave upon exposure to UV light, changing the surface from non-cell-adhesive to cell-adhesive without mechanical interference. Initial cell attaching areas are generated in arbitrary shapes via projection exposure through a photomask. After a growth phase, epithelial cell sheets are released from their confinement by a second illumination allowing for collective cell expansion. Our experiments with epithelial cells show that cluster size and boundary curvature modulate the expansion of the cell sheet and the formation of leader cells. At a certain cluster size, characteristics of the expansion behavior change and cells in the core are hardly affected by the boundary release. With donut-like ring structures, we demonstrate a break in symmetry between the behavior of cells along the outer convex boundary and along the inner concave boundary. Additionally, we observe that collective migration characteristics are modulated by the initial incubation time of the cell sheet. (C) 2011 Elsevier Ltd. All rights reserved.

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  • Display of Functionally Active PHB Depolymerase on Escherichia Coli Cell Surface

    Tomohiro Hiraishi, Koichi Yamashita, Masafumi Sakono, Jun Nakanishi, Liu-Tzea Tan, Kumar Sudesh, Hideki Abe, Mizuo Maeda

    MACROMOLECULAR BIOSCIENCE   12 ( 2 ) 218 - 224  2012.02  [Refereed]

     View Summary

    The display of PHB depolymerase (PhaZRpiT1) from R. pickettii T1 on the surface of E. coli JM109 cells is realized using OprI of P. aeruginosa as the anchoring motif. The fusion protein is stably expressed and its surface localization is verified by immunofluorescence microscopy. The displayed PhaZRpiT1 retains its cleaving ability for soluble substrates as well as its ability to adsorb to the PHB surface, and also remains catalycically active in the degradation of insoluble polyester materials, in spite of the possible suppression of the enzyme movement on the polymer surface. The results demonstrate that PhaZRpiT1-displaying E. coli shows potential for use as a whole-cell biocatalyst for the production of (R)-3-hydroxybutyrate monomers from insoluble PHB materials.

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  • Dynamic culture substrate that captures a specific extracellular matrix protein in response to light

    Jun Nakanishi, Hidekazu Nakayama, Kazuo Yamaguchi, Andres J. Garcia, Yasuhiro Horiike

    SCIENCE AND TECHNOLOGY OF ADVANCED MATERIALS   12 ( 4 )  2011.08  [Refereed]

     View Summary

    The development of methods for the off-on switching of immobilization or presentation of cell-adhesive peptides and proteins during cell culture is important because such surfaces are useful for the analysis of the dynamic processes of cell adhesion and migration. This paper describes a chemically functionalized gold substrate that captures a genetically tagged extracellular matrix protein in response to light. The substrate was composed of mixed self-assembled monolayers (SAMs) of three disulfide compounds containing (i) a photocleavable poly(ethylene glycol) (PEG), (ii) nitrilotriacetic acid (NTA) and (iii) hepta(ethylene glycol) (EG(7)). Although the NTA group has an intrinsic high affinity for oligohistidine tag (His-tag) sequences in its Ni2+-ion complex, the interaction was suppressed by the steric hindrance of coexisting PEG on the substrate surface. Upon photoirradiation of the substrate to release the PEG chain from the surface, this interaction became possible and hence the protein was captured at the irradiated regions, while keeping the non-specific adsorption of non-His-tagged proteins blocked by the EG7 underbrush. In this way, we selectively immobilized a His-tagged fibronectin fragment (FNIII7-10) to the irradiated regions. In contrast, when bovine serum albumin-a major serum protein-was added as a non-His-tagged protein, the surface did not permit its capture, with or without irradiation. In agreement with these results, cells were selectively attached to the irradiated patterns only when a His-tagged FNIII7-10 was added to the medium. These results indicate that the present method is useful for studying the cellular behavior on the specific extracellular matrix protein in cell-culturing environments.

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  • Fabrication process of micro-patterns on cell-culturing substrates toward high-resolution control and observation of cell migration

    Michiko Sugawara, Wonjun Choi, Jun Nakanishi, Kazuo Yamaguchi, Hideo Yokota, Tohru Yagi

    IEEJ Transactions on Electronics, Information and Systems   131 ( 4 ) 833 - 839  2011  [Refereed]

     View Summary

    It is well known that cell migrations play a key role in the living systems. From the basic technical point of view, cell migration control is one of the important and useful ways to clarify the mechanism of the cell migration qualitatively and quantitatively. For the purpose of high-resolution control and observation of the cell migrations, which is the goal of this research, in this study, an attempt was made to establish the fabrication process of micro-patterns on caged cell-culturing substrates using inverted microscope with high magnification objective lens. With the combination of fluorescence antibody technique, the adequate ultraviolet (UV) lay exposure time was obtained for the formation of micro-patterns of fibronectin on the caged cell-culturing substrates. We also confirmed that it was possible to control the position of micro-patterns by the primary and secondary UV exposure. In addition, Swiss 3T3 cell culture experiment demonstrated that the initial shape of the cell could be restricted by the primary UV exposure and that the secondary UV exposure was remarkably useful to control the cell migration. © 2011 The Institute of Electrical Engineers of Japan.

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  • Photocontrol of cell adhesion on amino-bearing surfaces by reversible conjugation of poly(ethylene glycol) via a photocleavable linker

    Shingo Kaneko, Hidekazu Nakayama, Yutaro Yoshino, Daisuke Fushimi, Kazuo Yamaguchi, Yasuhiro Horiike, Jun Nakanishi

    PHYSICAL CHEMISTRY CHEMICAL PHYSICS   13 ( 9 ) 4051 - 4059  2011  [Refereed]

     View Summary

    Dynamic control of cell adhesion on substrates is a useful technology in tissue engineering and basic biology. This paper describes a method for the control of cell adhesion on amino-bearing surfaces by reversible conjugation of an anti-fouling polymer, poly(ethylene glycol) (PEG), via a newly developed photocleavable linker, 1-(5-methoxy-2-nitro-4-prop-2-ynyloxyphenyl)ethyl N-succinimidyl carbonate (1). This molecule has alkyne and succinimidyl carbonate at each end, which are connected by photocleavable 2-nitrobenzyl ester. Under this molecular design, the molecule crosslinked azides and amines, whose linkage cleaved upon application of near-UV light. By using aminosilanised glass and silicon as model substrates, we studied their reversible surface modification with PEG-azide (M-w = 5000) based on contact angle measurements, ellipsometry, and AFM morphological observations. Protein adsorption and cell adhesion dramatically changed by PEGylation and the following irradiation, which can be used for cellular patterning. Also, the capability of the substrate to change cell adhesiveness by photoirradiation during cell cultivation was demonstrated by inducing cell migration. We believe this method will be useful for dynamic patterning of cells on protein-based scaffolds.

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  • Fabrication Process of Micro-patterns on Cell-Culturing Substrates Fabrication Process of Micro-patterns on Cell-Culturing Substrates

    MS and WC, N. Jun, KY, HY and TY

    電気学会論文誌c   131 ( 4 ) 833 - 839  2011  [Refereed]

  • Dynamic cell patterning technology based on photocleavable molecules

    Jun Nakanishi

    EMERGING FOCUS ON ADVANCED MATERIALS, PTS 1 AND 2   306-307   7 - 10  2011  [Refereed]

     View Summary

    Dynamic control of cell-substrate interactions is useful for exploring signaling processes involved in cell adhesion and migration as well as patterning heterotypic cells to mimic living tissues. We have developed photoactivatable substrates whose surface was modified with photoreleasable cell-repellent blocking agents. The surfaces are initially non-cell adhesive because of the presence of the blocking agents, but become cell adhesive upon near-UV irradiation of the substrates via the photo-induced desorption of the blocking agents. Here, I overview the developmental process of our photoactivatable substrates and demonstrate their potential uses for bioanalysis.

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  • Silane coupling agent bearing a photoremovable succinimidyl carbonate for patterning amines on glass and silicon surfaces with controlled surface densities

    Hidekazu Nakayama, Jun Nakanishi, Takahiro Shimizu, Yutaro Yoshino, Hideo Iwai, Shingo Kaneko, Yasuhiro Horiike, Kazuo Yamaguchi

    COLLOIDS AND SURFACES B-BIOINTERFACES   76 ( 1 ) 88 - 97  2010.03  [Refereed]

     View Summary

    Patterned immobilization of synthetic and biological ligands on material surfaces with controlled surface densities is important for various bioanalytical and cell biological purposes. This paper describes the synthesis, characterization, and application of a novel silane coupling agent bearing a photoremovable succinimidyl carbonate, which enables the photopatterning of various primary amines on glass and silicon surfaces. The silane coupling agent is 1-[5-methoxy-2-nitro-4-(3-trimethoxysilylpropyloxy)phenyl]ethyl N-succinimidyl carbonate. The distinct feature of this molecule is that it has a photocleavable 2-nitrobenzyl switch between a trimethoxysilyl group and a succinimidyl Carbonate, each reactive to the hydroxy groups of inorganic oxides and primary amines. Based on this molecular design, the compound allows for the one-step introduction Of succinimidyl carbonates onto the surface of glass and silicon, immobilization of primary amines, and region-selective and dose-dependent release of the amines by near-UV irradiation. Therefore, we were able to pattern amine ligands on the substrates in given Surface densities and arbitrary geometries by controlling the closes and regions of photoirradiation. These features were verified by UV-vis spectroscopy, contact angle measurements, infrared (IR) spectroscopy, X-ray photoelectron spectroscopy (XPS), ellipsometry, and atomic force Microscopy (AFM). The compound was applied to form a chemical density gradient of amino-biotin on a Silicon Substrate in a range of 0.87-0.12 chains/nm(2) by controlling photoirradiation under a standard fluorescence microscope. Furthermore, we also succeeded in forming a chemical density gradient at a lower surface density range (0.15-0.011 chains/nm(2)) on the Substrate by diluting the feed amino-biotin with an inert control amine. (C) 2009 Elsevier B.V. All rights reserved.

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  • Precise patterning of photoactivatable glass coverslip for fluorescence observation of shape-controlled cells

    Jun Nakanishi, Yukiko Kikuchi, Yuki Tsujimura, Hidekazu Nakayama, Shingo Kaneko, Takahiro Shimizu, Kazuo Yamaguchi, Hideo Yokota, Yasuhiko Yoshida, Tohru Takarada, Mizuo Maeda, Yasuhiro Horiike

    SUPRAMOLECULAR CHEMISTRY   22 ( 7-8 ) 396 - 405  2010  [Refereed]

     View Summary

    The shape of cells is a key determinant of cellular fates and activities. In this study, we demonstrate a method for controlling the cellular shape on a chemically modified glass coverslip with micropatterned cell adhesiveness. The glass surface was chemically modified with an alkylsiloxane monolayer having a caged carboxyl group, where single-cell-sized hydrophilic islands with hydrophobic background were created by irradiating the substrate in contact with a photomask to produce the carboxyl group. Thus, the created surface hydrophilicity pattern was converted to a negative pattern of a protein-repellent amphiphilic polymer, Pluronic F108, according to its preferential adsorption to the hydrophobic surfaces. The following addition of a cell-adhesive protein, fibronectin, resulted in its selective adsorption to the irradiated regions. In this way, cell-adhesive islands were produced reproductively, and the cells formed a given shape on the islands. As examples of the cell-shape control, we seeded HeLa cells and NIH3T3 cells to an array of triangular spots, and fluorescently imaged the dynamic motions of cell protrusions extended from the periphery of the cells. The present method will not only be useful for studying the molecular mechanism of cell polarity formation, but also for studying other shape-related cellular events such as apoptosis, differentiation and migration.

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  • Photoresponsive Materials for Controlling Cellular Functions

    Jun Nakanishi

    JOURNAL OF PHOTOPOLYMER SCIENCE AND TECHNOLOGY   23 ( 2 ) 171 - 172  2010  [Refereed]

     View Summary

    Activities of the cells are regulated by extracellular cues, including soluble factors, surrounding cells and extracellular matrices. This paper describes photoresponsive substrates and nanoparticles that enable us to control the extracellular cues both in time and space. Arraying heterotypic cells and their induction of migration and proliferation have been accomplished by physical or chemical adsorption of blocking agents to the photoresponsive substrates. Photo-induced production of biological active substances has become possible by tethering them to photoresponsive nanoparticles. These materials provide new methodology for engineering and exploring cellular functions.

  • Facile Creation of Biointerface on Commodity Plastic Surface by Combination of Atmospheric Plasma and Reactive Polymer Coating

    Naoki Kanayama, Swapan Kumar Saha, Naoki Nakayama, Jun Nakanishi, Katsuhisa Kitano, Satoshi Hamaguchi, Yukio Nagasaki

    JOURNAL OF PHOTOPOLYMER SCIENCE AND TECHNOLOGY   23 ( 4 ) 579 - 583  2010  [Refereed]

     View Summary

    In this study, we examined the construction of biointerfaces on a commodity plastic surface using the non-equilibrium atmospheric pressure low frequency plasma (LF plasma) and poly(ethylene glycol) (PEG) macromonomers with different terminal functional groups. The surface of polypropylene (PP) was spin coated with poly(4-chloromethylstyrene) (PCMS) followed by PEG macromonomers and irradiated with LF plasma. The chemical immobilization of PEG proceeded rapidly and mostly completed within 30 s, which was confirmed from the contact angle measurements. It is interesting to note that the surface properties were remarkably different by the end group of PEG macromonomers used in this study. Monoacrylated PEG macromonomer-treated substrate exhibited high anti-biofouling property whereas dimethacrylated end PEG did not show anti-biofouling property. This method is simple and applicable for constructing PEG-based biointerface on a variety of commodity plastics.

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  • Light-Regulated Activation of Cellular Signaling by Gold Nanoparticles That Capture and Release Amines

    Jun Nakanishi, Hidekazu Nakayama, Takahiro Shimizu, Haruhisa Ishida, Yukiko Kikuchi, Kazuo Yamaguchi, Yasuhiro Horiike

    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY   131 ( 11 ) 3822 - +  2009.03  [Refereed]

     View Summary

    A photoresponsive nanocarrier for amines based on gold nanoparticles (GNPs) having a photocleavable succinimidyl ester has been developed. It offers a useful platform for the synthesis of caged compounds. Using the GNPs, we have developed caged histamine for the first time and applied it to evoke intracellular signaling by controlled near-UV irradiation. The present work will allow for new possibilities in studies of inter- and intracellular signaling networks.

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  • 細胞パターニング

    N. Jun

    ナノ空間材料の創成と応用     205 - 213  2009  [Refereed]

  • Creation of Biointerface by Atmospheric Plasma Treatment of Plasma Sensitive Polymeric Materials

    Swapan Kumar Saha, Jun Nakanishi, Katsuhisa Kitano, Satoshi Hamaguchi, Yukio Nagasaki

    JOURNAL OF PHOTOPOLYMER SCIENCE AND TECHNOLOGY   22 ( 4 ) 481 - 484  2009  [Refereed]

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  • Arraying Heterotypic Single Cells on Photoactivatable Cell-Culturing Substrates

    Yukiko Kikuchi, Jun Nakanishi, Takahiro Shimizu, Hidekazu Nakayama, Satoshi Inoue, Kazuo Yamaguchi, Hideo Iwai, Yasuhlko Yoshida, Yasuhiro Horiike, Tohru Takarada, Mizuo Maeda

    LANGMUIR   24 ( 22 ) 13084 - 13095  2008.11  [Refereed]

     View Summary

    This article describes a photochemical method for the site-selective assembly of heterotypic cells on a glass substrate modified with a silane coupling agent having a caged functional group. Silane coupling agents having a carboxyl (COOH), amino (NH2), hydroxyl (OH), or thiol (SH) group protected by a photocleavable 2-nitrobenzyl group were synthesized to modify the surfaces of glass coverslips. The caged substrates were first coated by the adsorption of a blocking agent, bovine serum albumin (BSA), to make the entire surface non-cell-adhesive and then irradiated at 365 nm under a standard fluorescence microscope. The photocleavage reaction on the surface was followed by contact angle measurements and X-ray photoelectron spectroscopy. When COS7, NIH3T3, and HEK293 cells were seeded onto these substrates in a serum-free medium, the cells adhered selectively and efficiently to the irradiated regions on the caged NH2 Substrate, whereas the other caged COOH, SH, and OH substrates were nonphotoactivatable for cell adhesion. Qualitative and quantitative analysis of BSA adsorbed to the uncaged substrates revealed that this highly efficient photoactivation on the caged NH2 substrate arose because of the following reasons: (i) upon photoactivation, BSA adsorbed in advance on the 2-nitrobenzyl groups was readsorbed onto the uncaged functional groups and (ii) BSA readsorbed onto the NH2 groups became unable to passivate the surface against cell adhesion whereas BSA on the other groups still had normal passivating activity. It was also demonstrated that heterotypic single COS7, NIH3T3, and HEK293 cells were positioned at any desired arrangement on the caged NH2 substrate by repeating the UV irradiation at optimized array spot sizes and cell seeding in optimized cell concentrations. The present method will be particularly useful in studying the dynamic processes of cell-cell interactions at a single-cell level.

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  • Liquid Manipulation Lithography to Fabricate a Multifunctional Microarray of Organosilanes on an Oxide Surface under Ambient Conditions

    Naoto Shirahata, Jun Nakanishi, Yoshitaka Echikawa, Atsushi Hozumi, Yoshitake Masuda, Shigeru Ito, Yoshio Sakka

    ADVANCED FUNCTIONAL MATERIALS   18 ( 19 ) 3049 - 3055  2008.10  [Refereed]

     View Summary

    A novel method to produce a multifunctional microarray in which different types of self-assembled monolayers (SAMs) are positioned on predefined surface sites on an oxide-covered silicon substrate is described. To achieve this, a liquid-transportation system called "liquid manipulation lithography" (LML) is developed. This system allows the delivery of different varieties of molecular inks, trialkoxysilanes, onto each predefined surface position of the given substrate even under ambient conditions. Under optimum conditions, the transferred trialkoxysilane inks first form one-molecule-thick microstructures at each surface position through the hydrolysis of the reactive silanes with surface water adsorbed on the substrate, followed by a condensation reaction. Three types of trialkoxysilanes with long alkyl-chains, specifically triethoxysilylundecanal (TESUD), N-(6-amino-hexyl)-3-aminopropyltrimethoxysilane (AHAPS), and octadecyltrimethoxysilane (OTS), are used as model molecular inks due to their high-end group-functionalities in biological and electronic applications. The precise positioning of the ink with sub-micrometer edge resolution is performed by carefully controlling a femtoliter-scale liquid-injection micromanipulator under a microscope. To ensure that the prepared SAM microarray is available for parallel analysis of biomolecular interactions, the area-selective immobilization of a protein molecule is explored. Successful observation of the area-selective biomolecular attachment confirmed a high industrial potential for the method as a lithography-free process for the miniaturization of a multifunctional SAM array on an oxide substrate.

    DOI

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    15
    Citation
    (Scopus)
  • Grafting Poly(ethylene glycol) to a Glass Surface via a Photocleavable Linker for Light-induced Cell Micropatterning and Cell Proliferation Control

    Yukiko Kikuchi, Jun Nakanishi, Hidekazu Nakayama, Takahiro Shimizu, Yutaro Yoshino, Kazuo Yamaguchi, Yasuhiko Yoshida, Yasuhiro Horiike

    CHEMISTRY LETTERS   37 ( 10 ) 1062 - 1063  2008.10  [Refereed]

     View Summary

    This paper describes a glass substrate having a photocleavable poly(ethylene glycol) (PEG) designed for light-induced cell micropatterning. The Substrate changed from non-cell-adhesive to cell-adhesive by the photocleavage of PEG. Cellular patterns maintained for more than 17 days, and they were able to be changed to control cell migration and proliferation at multi- and single-cell levels by irradiating their adjacent regions during cell cultivation.

    DOI

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    33
    Citation
    (Scopus)
  • A photoactivatable culture substrate based on a photocleavable poly(ethylene glycol)

    Yukiko Kikuchi, Jun Nakanishi, Hidekazu Nakayama, Takahiro Shimizu, Kazuo Yamaguchi, Yasuhiko Yoshida, Yasuhiro Horiike

    8th World Biomaterials Congress 2008   3   1679  2008

  • Recent advances in cell micropatterning techniques for bioanalytical and biomedical sciences

    Jun Nakanishi, Tohru Takarada, Kazuo Yamaguchi, Mizuo Maeda

    ANALYTICAL SCIENCES   24 ( 1 ) 67 - 72  2008.01  [Refereed]

     View Summary

    Cell micropatterning is an important technique for a wide range of applications, such as tissue engineering, cell-based drug screening, and fundamental cell biology studies. This paper overviews cell patterning techniques based on chemically modified substrates with different degrees of cell adhesiveness. In particular, the focus is on dynamic substrates that change their cell adhesiveness in response to external stimuli, such as heat, voltage, and light. Such substrates allow researchers to achieve an in situ alteration of patterns of cell adhesiveness, which is useful for co-culturing multiple cell types and analyzing dynamic cellular activities. As an example of dynamic substrates, we introduce a dynamic substrate based on a caged compound, where we accomplished a light-driven alteration of cell adhesiveness and the analysis of a single cell's motility.

    DOI

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    110
    Citation
    (Scopus)
  • Spatiotemporal control of migration of single cells on a photoactivatable cell microarray

    Jun Nakanishi, Yukiko Kikuchi, Satoshi Inoue, Kazuo Yamaguchi, Tohru Takarada, Mizuo Maeda

    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY   129 ( 21 ) 6694 - +  2007.05  [Refereed]

     View Summary

    Spatiotemporal control of cell migration was achieved on a photoactivatable cell-culturing substrate. Single cells were micropatterned on the substrate and were induced to extend protrusions led by lamellipodia or filopodia alternatively by the subsequent formation of wide or narrow paths in their surroundings, respectively. By tracking the migration of single cells in a microarray format, we performed quantitative analysis of the migration rates of single cells.

    DOI

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    103
    Citation
    (Scopus)
  • 光分解性シランカップリング剤による自己組織化単分子膜のパターニング

    Kazuo Yamaguchi, Jun Nakanishi, Hidekazu Nakayama

    未来材料   7 ( 11 ) 18 - 26  2007  [Refereed]

    CiNii

  • ケージド細胞培養基板を用いた細胞接着制御

    N. Jun

    分子イメージング     43 - 47  2007  [Refereed]

  • Photografting and patterning of oligonucleotides on benzophenone-modified boron-doped diamond

    Sabine Szunerits, Naoto Shirahata, Paolo Actis, Jun Nakanishi, Rabah Boukherroub

    CHEMICAL COMMUNICATIONS   ( 27 ) 2793 - 2795  2007  [Refereed]

     View Summary

    Irradiation of a patterned benzophenone-terminated boron-doped diamond (BDD) surface with UV light (lambda = 350 nm) in the presence of a 15(mer) oligonucleotide resulted in the covalent linking of the DNA strand to the BDD interface.

    DOI

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    24
    Citation
    (Scopus)
  • Control of cellular microenvironment with a caged compound immobilized on a surface

    N. Jun

    蛋白質核酸酵素   52 ( 13 ) 1613 - 1618  2007  [Refereed]

    CiNii

  • Spatiotemporal control of cell adhesion on a self-assembled monolayer having a photocleavable protecting group

    Jun Nakanishi, Yukiko Kikuchi, Tohru Takarada, Hidekazu Nakayama, Kazuo Yamaguchi, Mizuo Maeda

    ANALYTICA CHIMICA ACTA   578 ( 1 ) 100 - 104  2006.09  [Refereed]

     View Summary

    Control of cell adhesion is a key technology for cell-based drug screening and for analyses of cellular processes. We developed a method to spatiotemporally control cell adhesion using a photochemical reaction. We prepared a cell-culturing substrate by modifying the surface of a glass coverslip, with a self-assembled monolayer of an alkylsiloxane having a photocleavable 2-nitrobenzyl group. Bovine serum albumin (BSA) was adsorbed onto the substrate to make the surface inert to cell adhesion. When exposed to UV light, the alkylsiloxane underwent a photocleavage reaction, leading to the release of BSA from the surface. Fibronectin, a protein promoting cell adhesion, was added to cover the irradiated regions and made them cell-adhesive. Seeding of cells on this substrate resulted in their selective adhesion to the illuminated regions. By controlling the sizes of the illuminated regions, we formed cell-adhesive spots smaller than single cells and located focal adhesions of the cells. Moreover, by subsequently illuminating the region alongside the cells patterned on the substrate in advance, we released their geometrical confinements and induced migration and proliferation. These manipulations were conducted under a conventional fluorescence microscope without any additional instruments. The present method of cell manipulation will be useful for cell biological studies as well as for the formation of cell arrays. (c) 2006 Elsevier B.V. All rights reserved.

    DOI

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    66
    Citation
    (Scopus)
  • FRET-based monitoring of conformational change of the beta(2) adrenergic receptor in living cells

    J Nakanishi, T Takarada, S Yunoki, Y Kikuchi, M Maeda

    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS   343 ( 4 ) 1191 - 1196  2006.05  [Refereed]

     View Summary

    The beta(2) adrenergic receptor (beta(2)AR) is a G protein-coupled receptor that is selective to epinephrine. We demonstrate herein monitoring of an agonist-induced conformational change Of PAR in living cells. The monitoring method is based on fluorescence resonance energy transfer from a cyan fluorescent protein (CFP) to a biarsenical fluorophore, FlAsH, attached to the C-terminus, and the third intracellular loop (ICL3), respectively. Recombinant beta(2)ARs exhibited agonist-induced increases in the FlAsH/CFP emission ratio, indicating that the ICL3 approached the C-terminus upon activation. Since the emission ratio changes were on a time scale of seconds, the conformational change of beta(2)AR in living cells was more rapid than that of purified beta(2)AR measured in vitro. Interestingly, the direction of the emission ratio change Of PAR was opposite to that of the norepinephrine-responsive alpha(2A) adrenergic receptor reported recently. It was suggested that this discrepancy corresponds directly to the diametric biological functions, i.e., the activation or inactivation of adenylyl cyclase. (c) 2006 Elsevier Inc. All rights reserved.

    DOI

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    60
    Citation
    (Scopus)
  • Facile preparation of single-cell arrays on caged cell-culturing substrates

    Yukiko Kikuchi, Jun Nakanishi, Tohru Takarada, Satoshi Inoue, Kazuo Yamaguchi, Yasuhiko Yoshida, Mizuo Maeda

    Polymer Preprints, Japan   55 ( 2 ) 5428 - 5429  2006

     View Summary

    Caged cell-culturing substrate is composed of a glass substrate immobilized with an alkylsiloxane monolayer having a photocleavable protecting group. This substrate allows to form cell-adhesive regions by UV illumination under a conventional fluorescence microscope. In the present study, we examined the effect of terminal functional groups on the efficiencies of photoactivation for cell adhesion. Among four tested substrates terminating with different functional groups, the photoactivation of cell adhesion was the most effective on that terminating with an amino group. In addition, we demonstrated a facile preparation of single-cell arrays on this substrate.

  • Spatiotemporal control of migration of single cells arrayed on a caged cell-culturing substrate

    Jun Nakanishi, Yukiko Kikuchi, Satoshi Inoue, Kazuo Yamaguchi, Tohru Takarada, Mizuo Maeda

    Polymer Preprints, Japan   55 ( 2 ) 4861  2006

     View Summary

    Spatiotemporal control of cell protrusions and migration were achieved on a photoactivatable cell-culturing substrate. Single cells were micropatterned on the substrate and were induced to extend lamellipodia or filopodia alternatively by the subsequent formation of wide or narrow paths in their surroundings, respectively. By tracking the migration of individual cells in a microarray format, we demonstrated that the cell migration led by lamellipodia was more rapid than that led by filopodia.

  • 新規細胞アレイ作製法

    中西淳, 前田瑞夫

    医学のあゆみ   218 ( 2 ) 125 - 128  2006  [Refereed]

  • Preparation of cell arrays on caged-cell culturing substrates

    TT an, N. Jun

    バイオインダストリー   64 ( 1 ) 6 - 11  2006  [Refereed]

  • Fluorescence Imaging of Cells on Micropatterned Surfaces

    N. Jun

    ぶんせき   7   358 - 358  2006  [Refereed]

  • Photonavigation of cell migration on caged cell-culturing substrates

    Jun Nakanishi, Tohru Takarada, Yukiko Kikuchi, Hidekazu Nakyama, Kazuo Yamaguchi, Mizuo Maeda

    Polymer Preprints, Japan   54 ( 1 ) 2341  2005

     View Summary

    Cell migration is a fundamental biological activity, which is involved in both physiological and pathological processes, including embryonic development, inflammation, cancer cell migration, and metastasis. In the present study, we have developed a new method for studying the migration of single cells using a "Caged Cell-Culturing Substrate", which we had recently developed. Cells attached onto a single cell array were released from their geometrical confinements by illumination, which switched on migration of the cells onto the illuminated regions. The formation of cell-adhesive regions can be conducted under fluorescence microscopes. The present method will be useful for studying the regulatory mechanism of cell motility.

  • Preparation of single-cell arrays on caged cell-culturing substrates

    Yukiko Kikuchi, Jun Nakanishi, Tohru Takarada, Hidekazu Nakayama, Kazuo Yamaguchi, Yasuhiko Yoshida, Mizuo Maeda

    Polymer Preprints, Japan   54 ( 2 ) 4998  2005

     View Summary

    Caged cell-culturing substrate is composed of a glass substrate coated with an alkylsiloxane monolayer having a photocleavable 2-nitrobenzyl group. In the present study, we examined the effect of terminal functional groups on the efficiencies of photoactivation for cell adhesion. Among four tested substrates terminating with different functional groups, the photoactivation of cell adhesion was the most effective on that terminating with an amino group. We succeeded in preparing single-cell arrays on this substrate without using fibronectin.

  • Photoactivation of cell adhesion on Caged Cell-Culturing Substrates: Effect of terminal functional groups on activation efficiency

    Yukiko Kikuchi, Jun Nakanishi, Tohru Takarada, Hidekazu Nakayama, Kazuo Yamaguchi, Yasuhiko Yoshida, Mizuo Maeda

    Polymer Preprints, Japan   54 ( 1 ) 2340  2005

     View Summary

    We have recently reported a "Caged Cell-Culturing Substrate", where cell adhesion can be switched on by UV illumination. The substrate is based on an alkylsiloxane terminating with a carboxyl group that is protected by a photocleavable 2-nitrobenzyl group. In the present study, we examined the effect of terminal functional groups on photoactivation of cell adhesion. Among four tested substrates terminating with different functional groups, the photoconversion of cell adhesion was the most effective on that terminating with an amino group.

  • Cell patterning and navigation of cell migration on caged cell-culturing substrate

    Jun Nakanishi, Yukiko Kikuchi, Tohru Takarada, Hidekazu Nakayama, Kazuo Yamaguchi, Mizuo Maeda

    Polymer Preprints, Japan   54 ( 2 ) 5197 - 5198  2005

     View Summary

    Caged cell-culturing substrate is composed of a glass substrate immobilized with a monolayer having a photocleavable protecting group. This substrate can be activated for cell adhesion by illumination of light. By using this substrate, we have succeeded in micropatterning of cells corresponding to photomasks inserted at the location of the field diaphragm of a standard fluorescence microscope. In the present study, we evaluated the effect of terminal functional groups in caged cell-culturing substrates on photoactivation of cell adhesion without using fibronectin. In addition, we applied one of the substrates to navigate migration of single cells from their original pattern by illumination of light.

  • Photoactivation of a substrate for cell adhesion under standard fluorescence microscopes

    J Nakanishi, Y Kikuchi, T Takarada, H Nakayama, K Yamaguchi, M Maeda

    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY   126 ( 50 ) 16314 - 16315  2004.12

    DOI

    Scopus

    177
    Citation
    (Scopus)
  • A new protein conformation indicator based on biarsenical fluorescein with an extended benzoic acid moiety

    J Nakanishi, M Maeda, Y Umezawa

    ANALYTICAL SCIENCES   20 ( 2 ) 273 - 278  2004.02

     View Summary

    We demonstrate herein a new protein conformation indicator based on biarsenical fluorescein with an extended benzoic acid moiety. The present indicator is reactive to a genetically introduced tetracysteine motif (Cys-Cys-Xaa-Xaa-Cys-Cys, where Xaa is a noncysteine amino acid) of proteins. Compared to the original biarsenical fluorescein (FlAsH) and the biarsenical Nile red analogue (BArNile), the present indicator exhibited larger fluorescence intensity changes in response to Ca2+-induced conformational rearrangements of calmodulin. A calculation of the highest occupied molecular orbital (HOMO) level of the benzoic acid moiety of the indicator molecule supports possible involvement of a photoinduced electron transfer (PET) process. These results indicate that the present indicator is useful for sensitive detection of protein conformational changes.

    DOI PubMed CiNii

    Scopus

    22
    Citation
    (Scopus)
  • Potentiometric selectivity coefficients of ion-selective electrodes Part II. Inorganic anions - (IUPAC technical report)

    Y Umezawa, K Umezawa, P Buhlmann, N Hamada, H Aoki, J Nakanishi, M Sato, KP Xiao, Y Nishimura

    PURE AND APPLIED CHEMISTRY   74 ( 6 ) 923 - 994  2002.06  [Refereed]

     View Summary

    Potentiometric selectivity coefficients, K-A,B(pot), have been collected for ionophore-based ion-selective electrodes (ISEs) for inorganic anions reported during 1988-1998. In addition to the actual numerical values of K-A,B(pot) together with the methods and conditions for their determination, response slopes, linear concentration (activity) ranges, chemical compositions, and ionophore structures for the ISE membranes are tabulated.

    DOI

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    123
    Citation
    (Scopus)
  • Imaging of conformational changes of proteins with a new environment/sensitive fluorescent probe designed for site specific labeling of recombinant proteins in live cells

    J Nakanishi, T Nakajima, M Sato, T Ozawa, K Tohda, Y Umezawa

    ANALYTICAL CHEMISTRY   73 ( 13 ) 2920 - 2928  2001.07

     View Summary

    We demonstrate herein a new method for imaging conformational changes of proteins in live cells using a new synthetic environment-sensitive fluorescent probe, 9-amino-6,8-bis(1,3,2-dithioarsolan-2-yl)-5H-benzo[a]phenoxazin-5-one. This fluorescent probe can be attached to recombinant proteins containing four cysteine residues at the i, i + i, i + 4, and i + 5 positions of an alpha -helix. The specific binding of the fluorescent probe to this 4Cys motif enables fluorescent labeling inside cells by its extracellular administration. The high sensitivity of the fluorophore to its environment enables monitoring of the conformational changes of the proteins in live cells as changes in its fluorescence intensity, The present method was applied to calmodulin (CaM), a Ca2+-binding protein that was well known to expose hydrophobic domains, depending on the Ca2+ concentration. A recombinant CaM fused at its C-terminal with a helical peptide containing a 4Cys motif was labeled with the fluorescent probe inside live cells. The fluorescence intensity changed reversibly depending on the intracellular Ca2+ concentration, which reflected the conformational change of the recombinant CaM in the live cells.

    DOI

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    77
    Citation
    (Scopus)
  • A method for evaluating chemical selectivity of agonists for glutamate receptor channels incorporated in liposomes based on an agonist-induced ion flux measured by ion-selective electrodes

    H Radecka, J Nakanishi, A Hirano, M Sugawara, Y Umezawa

    JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS   19 ( 1-2 ) 205 - 216  1999.02  [Refereed]

     View Summary

    A new method for evaluating chemical selectivity of agonists for the NMDA subtype of glutamate receptor (GluR) channels is described. The method is based on the magnitude of Ca2+ release from GluR-incorporated liposomes, which is measured by a Ca2+ ion-selective electrode with a thin-layer mode. The partially purified GluRs from rat whole brain were reconstituted into Ca2+-loaded liposomes. Small aliquots (each 50 mu l) of the proteoliposomes, in the presence of an antagonist DNQX for blocking non-NMDA subtype, were subjected to potentiometric measurements of Ca2+ release under stimulation by three kinds of agonists, i.e. NMDA, L-glutamate and L-CCG-IV. The amount of the Ca2+-ion flux through the GluR channel induced by the agonists was found to increase in the order of NMDA &lt; L-glutamate &lt; L-CCG-IV, which was consistent with that of binding affinity of the agonists toward the NMDA subtype. However, the range of selectivity of the relevant agonists was much smaller compared with results based on binding affinities. The present method provides physiologically more relevant values for the agonist selectivity of GluRs as compared to that of the conventional binding assay in the sense that the selectivity is based on the very magnitude of Ca2+ flux through the NMDA receptor, i.e. the extent of signal transduction by a given agonist. The evaluation of agonist selectivity based on Na+ release was also investigated by using a Na+ ion-selective electrode, but agonist-induced Na+ release was not detected, because of low permeability of Na+ through the NMDA subtype. (C) 1999 Elsevier Science B.V. All rights reserved.

    DOI

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    10
    Citation
    (Scopus)
  • Electrochemical evaluation of chemical selectivity of glutamate receptor ion channel proteins with a multi-channel sensor

    M Sugawara, A Hirano, M Rehak, J Nakanishi, K Kawai, H Sato, Y Umezawa

    BIOSENSORS & BIOELECTRONICS   12 ( 5 ) 425 - 439  1997  [Refereed]

     View Summary

    A new method for evaluating chemical selectivity of agonists towards receptor ion channel proteins is proposed by using glutamate receptor (GluR) ion channel proteins and their agonists N-methyl-D-aspartic acid (NMDA), L-glutamate, and (2S, 3R, 4S) isomer of 2-(carboxycyclopropyl)glycine (L-CCGIV). Integrated multi-channel currents, corresponding to the sum of total amount of ions passed through the multiple open channels, were used as a measure of agonists' selectivity to recognize ion channel proteins and induce channel currents. GluRs isolated from rat synaptic plasma membranes were incorporated into planar bilayer lipid membranes (BLMs) formed by the folding method. The empirical factors that affect the selectivity were demonstrated: (i) the number of GluRs incorporated into BLMs varied from one membrane to another; (ii) each BLM contained different subtypes of GluRs (NMDA and/or non-NMDA subtypes); and (iii) the magnitude of multi-channel responses induced by L-glutamate at negative applied potentials was larger than at positive potentials, while those by NMDA and L-CCG-IV were linearly related to applied potentials. The chemical selectivity among NMDA, L-glutamate and L-CCG-IV for NMDA subtype of GluRs was determined with each single BLM in which only NMDA subtype of GluRs was designed to be active by inhibiting the non-NMDA subtypes using a specific antagonist DNQX. The order of selectivity among the relevant agonists for the NMDA receptor subtype was found to be L-CCG-IV&gt;L-glutamate&gt;NMDA, which is consistent with the order of binding affinity of these agonists towards the same NMDA subtypes. The potential use of this approach for evaluating chemical selectivity towards non-NMDA receptor subtypes of GluRs and other receptor ion channel proteins is discussed. (C) 1997 Elsevier Science Limited.

    DOI

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    36
    Citation
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▼display all

Books and Other Publications

  • Material-based mechanobiology

    Nakanishi, Jun, Uto, Koichiro( Part: Joint editor)

    Royal Society of Chemistry  2022.08 ISBN: 9781839161858

  • バイオサイエンスのための物理化学

    Tinoco, Ignacio, Sauer, Kenneth, Wang, James C., Puglisi, Joseph D., Harbison, Gerard Stanislaus, Rovnyak, David, 桜井, 実, 佐藤, 衛, 高橋, 栄夫, 中西, 淳, 猪飼, 篤, 伏見, 譲( Part: Joint translator)

    東京化学同人  2015.06 ISBN: 9784807908806

Works

  • 細胞のパターニング技術の開発

    2003
    -
    2005

  • Development of Cell Patterning Technology

    2002
    -
    2005

Research Projects

  • Development of sustainable liquid interfacial culture system and its medical applications

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research

    Project Year :

    2023.06
    -
    2026.03
     

  • Development of bioinert hierachical materials for exploring cellular mechanosensing of liquid scaffolds

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research

    Project Year :

    2022.04
    -
    2025.03
     

  • Innovative culture system based on liquid scaffolds

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research

    Project Year :

    2020.07
    -
    2023.03
     

  • Preparation of mechanobiological polymer gels by independent control of mechanical/chemical properties

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research

    Project Year :

    2020.04
    -
    2023.03
     

  • Building Infrastructure for Active Analysis of Cell Mechanobiololgy

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research

    Project Year :

    2018.04
    -
    2021.03
     

    NAKANISHI Jun

     View Summary

    Cells sense the mechanical properties of their extracellular matrices (ECMs). To understand the dynamics of the processes, it is crucial to develop methods to manipulate the mechanics of the ECMS in situ. In this research, we have developed hydrogel based on a polymer grafting the photoisomerizable azobenzene molecule and succeeded in controlling the substrate elasticity through the photo-induced phase separation behavior of the polymer. We applied the method to investigate epithelial-mesenchymal transition of a breast cancer cell line and established the methodology for the active watching of the cellular mechanosensing.

  • Development of multi-llayer cell stretching devices

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research

    Project Year :

    2018.06
    -
    2020.03
     

    NAKANISHI Jun

     View Summary

    In our living body, many cells are exposed to stretching stimuli, whose physiological functions are yet-to-be determined. In this study, we have developed a functional hydrogel, which can be swollen and shrunk in response to photoirradiation, in order to apply arbitral stretching stimuli to cells. During this research period, we have successfully developed such functional hydrogel and succeeded culturing cells thereon. This device will be useful to investigate cellular responses against mechanical stretching of various scales.

  • A time-resolved analysis of intracellular signal transduction in response to non-diffusible factor

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research

    Project Year :

    2016.04
    -
    2018.03
     

    Nakanishi Jun

     View Summary

    Some diffusible biomolecules change their activities upon their conjugation to materials. In this project, we developed new research tools for cellular responses to material-biomolecule conjugates. We have succeeded in observation dynamic processes of estradiol or epidermal growth factor conjugated to micropatterned substrates and nanoparticles, respectively. These methods will give us useful information for the developments of new biomaterials and drugs.

  • Development and applications of novel cell culture systems for quantitative and physiologically relevant evaluation of epithelial-mesenchymal transition

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research

    Project Year :

    2015.04
    -
    2018.03
     

    Nakanishi Jun, YAMAGUCHI Kazuo, SUGAWARA Michiko

     View Summary

    Epithelial-mesenchymal transition (EMT) is a change in migration phenotype. It is thought as a promising target for cancer therapy. However, there was no convenient methods for the quantitative evaluation of EMT in physiologically relevant conditions. In the project, we revised our original photoactivatable substrates from the viewpoint of manipulating cellular mechanical environments and improving the responsivity of the photochemical reactions to make the platforms more suitable for the EMT assay. We have also succeeded in developing a mathematical method for the EMT quantification.

  • Preparation of nanoparticles that exhibit all-or-nothing interactions with cells

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research

    Project Year :

    2014.04
    -
    2016.03
     

    Nakanishi Jun

     View Summary

    The purpose of the present study is to develop a method for the preparation of patchy nanoparticles, where ligand molecules are immobilized on the particle surface in a patchy fashion. We hypothesized that cells that abundantly express corresponding membrane receptors can be labeled with the patchy nanoparticles by precisely tuning the patchiness and molecular crowding of the immobilized ligands. As a proof-of-concept experiment, we functionalized gold nanoparticles with epidermal growth factor and photocleavable poly(ethylene glycol) (PEG). This particle exhibited photoirradiation- dependent increase in the interaction with the EGF receptor molecules. To further look into the interactions of EGF-immobilized gold nanoparticles with the cells, we isolated detergent-resistant membrane fraction on sucrose density gradients. We found the EGF receptors activated by the EGF-immobilized patchy particles exhibited distinct membrane trafficking from those of soluble EGF.

  • Control of cellular microenvironments and analysis of cellular functions by using caged culture substrates

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research

    Project Year :

    2011
    -
    2012
     

    NAKANISHI Jun

     View Summary

    Dynamic substrates that change surface cell adhesiveness in response to an extracellular stimulus are useful for fundamental biological studies as well as tissue engineering applications. This project focused on the development and applications of photo-responsive “caged culture substrates”. By functionalization of a surface with the controlled amino group density, we succeeded in improving the photoswitching efficiency. Furthermore, by analyzing cell migration in controlled cellular microenvironments, we found that the cells achieve collective characteristics as increasing cluster size as well as incubation time.

  • Tissue engineering based on reversible modification of bio-oriented scaffolds

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research

    Project Year :

    2008
    -
    2009
     

    NAKANISHI Jun

     View Summary

    In this study, I have developed a method for reversible modification of the surface properties of bio-oriented scaffolds by using a molecule that can be once conjugated but cleaved in response to light. As a proof of concept, I demonstrated a reversible modification of an amino-terminated surface with poly(ethylene glycol) and control of its cell adhesiveness. In addition, I have succeeded in the control of the activity of biological amine and the formation of surface chemical gradients on gold nanoparticles and substrates based on the similar strategy.

  • 時空間を制限した細胞内シグナルの発生とその計測

    JST戦略的創造研究推進制度(個人研究型) (個人研究推進事業:さきがけ研究21‐PRESTO)

    Project Year :

    2005
    -
    2009
     

  • Generation and Measurement of Spatially and Temporally Controlled Intracellular Signaling

    JST Basic Research Programs (Precursory Research for Embryonic Science and Technology :PRESTO)

    Project Year :

    2005
    -
    2009
     

  • ケージド化合物の創成

    JST戦略的創造研究推進制度(個人研究型) (個人研究推進事業:さきがけ研究21‐PRESTO)

    Project Year :

    2006
    -
     
     

  • 機能性遺伝子探索のための一細胞の光単離法

    日本学術振興会  科学研究費助成事業

    Project Year :

    2005
    -
    2006
     

    中西 淳

     View Summary

    本研究では,細胞を用いた遺伝子クローニングを行うべく,細胞集団の中から特定一細胞を光単離する方法の開発を目指している.本年度は,以下の研究を行った.
    1.細胞の光剥離法の開発
    金基板上に光分解性基を介して末端に活性エステルを有するチオールの単分子膜を形成させた.活性エステル基にビオチンアミンもしくはエチレングリコールモノアミンを結合させた後,縞状に光照射を行った.それぞれの基板に対し,アビジン標識ビーズおよび蛍光標識蛋白質を作用させたところ,光照射領域ではこれらのアミンが解離していることが分かった.このことから,細胞膜上のインテグリンと相互作用するRGDペプチドをアミンとして用いることで基板上に接着した細胞を光剥離できると予想され,現在その検討を行っている.
    2.細胞の選択的増殖法の開発
    光分解性基によってカルボキシル基を保護した化合物で表面修飾したガラス基板をアルブミンなどのブロッキング剤を吸着させることで,光照射領域に選択的に細胞を接着させることができる.この基板上にパターン化したHEK293細胞に対し,その周辺領域を光照射したところ,光照射依存的に細胞増殖を誘導できた.同様のことは一細胞アレイ上でも実現可能であった.1で述べた細胞剥離とは別の戦略として,狙った一細胞を選択的に増殖させ,不要な細胞の増殖を抑制することでも細胞単離が可能であると考えられ,現在,この戦略の検討を行っている.
    3.クローニング対象遺伝子の選別法の開発
    タグ配列を有するアドレナリン受容体を数種類作成し,タグ導入位置とタグを色素標識した際の蛍光応答との関係を解析した.アドレナリンに対する蛍光強度変化はタグ導入位置に大きく依存していた.このことから,任意の位置にタグを導入したライブラリーの中から,蛍光強度を指標にアドレナリンに対して高感度に応答する遺伝子を選別できることが分かった.

  • Development of Cell-based Sensors

    New Program for the Promotion of Basic Reseach by Public Corporation

    Project Year :

    2002
    -
    2005
     

  • Cell Patterning

    Grant-in-Aid for Scientific Research

    Project Year :

    2002
    -
    2005
     

  • 神経伝達物質に応答して蛍光を発する新規細胞型センサー

    日本学術振興会  科学研究費助成事業

    Project Year :

    2003
    -
    2004
     

    中西 淳

     View Summary

    本研究では,生細胞の形質膜中に存在する受容体蛋白質を用い,同受容体の神経伝達物質の結合に伴う構造変化を検出する方法を開発すると共に,それを利用した新規細胞型センサーの開発を行った.
    1.受容体蛋白質として神経伝達物質のアドレナリンに対する受容体(β_2AR)を用いた.C末ループの71残基を欠損させたβ_2ARのC末端にCFP,そして第三細胞内ループ内に重ヒ素化蛍光色素FlAsHが結合するCCPGCC配列を導入した遺伝子を作成した(β_2AR229C:FP,β_2AR238CFP,β_2AR250CFP).各遺伝子をHEK293細胞に発現させた後,FlAsHで標識したところ,β_2AR250CFPにおいてCFP-FlAsH間のFRET効率が最大の値を示した.さらに,β_2AR250CFPでは,アドレナリンを添加するとFRET効率が減少し,続いて,阻害剤のICI 118,551を添加するとFRET効率の減少がおさまり,神経伝達物質に応答性を示すことが分かった.以上より,細胞型センサーの開発に成功した(投稿中).
    2.基板上の任意の位置に細胞を配置する技術の開発を行った.この目的のために,光分解性保護基を有する単分子膜で修飾したガラス基板を用いた.この基板に細胞接着を抑制するウシ血清アルブミンをコートした後に,光照射すると,アルブミンが表面より解離することを見出した.続いて,細胞接着を促進するフィブロネクチンを添加すると,フィブロネクチンが光照射領域に選択的に吸着し,細胞接着面が形成されること分かった.この方法を用い,一細胞を基板上の任意の位置に配置することに成功した(JACS).
    1,2に基づき,様々な神経伝達物質に対する細胞型センサーを集積化することで,極微少量の神経伝達物質をリアルタイムで網羅解析することが可能になると期待される.

  • 細胞の共培養

    特殊法人等における新たな基礎研究推進制度

    Project Year :

    2003
    -
     
     

  • 細胞パターニング

    科学研究費補助金

    Project Year :

    2003
    -
     
     

  • 細胞基盤蛍光センサーの開発

    特殊法人等における新たな基礎研究推進制度

    Project Year :

    2002
    -
     
     

  • 蛋白質構造変化に基づく酵素活性のバイオイメージング法の開発

    日本学術振興会  科学研究費助成事業

    Project Year :

    2000
    -
    2001
     

    中西 淳

  • Coculturing of Different Cell Types

    New Program for the Promotion of Basic Reseach by Public Corporation

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Misc

  • Development of a Dynamic Cell Scaffold for Study of Matrix-driven Epithelial-mesenchymal Transition Progression

    Shota Yamamoto, Jun Nakanishi

    Bunseki Kagaku   73 ( 3 ) 103 - 109  2024  [Refereed]

    Authorship:Corresponding author

     View Summary

    Epithelial-mesenchymal transition (EMT) is a dynamic cellular phenotypic change from an epithelial-like to a mesenchymal-like phenotype, which leads to functional changes in cell migration, invasion and metastasis. Recent research showed EMT is not only induced by soluble factors and gene expression but also by the biochemical and mechanical cues of the extracellular matrix (ECM). However, the effect of quantitative and dynamic changes in the ECM-driven biochemical cues on cellular phenotypes remains unclear. In this study, we developed a photoactivatable substrate that can change the cyclic Arg-Gly-Asp (cRGD) ligand density on a substrate surface based on the photocleavage reaction of the 2-nitrobenzyl compound. We observed the epithelial-to-mesenchymal morphological change in Madin-Darby canine kidney (MDCK) cells upon decreasing the cRGD density on the substrate by photoirradiation. In addition, fluorescence live imaging demonstrated membrane ruffling by the sudden cRGD density decreases, presumably due to the reorganization of the actin cytoskeleton. This photoresponsive cell scaffold is useful for the quantitative and qualitative analyses of the dynamic cellular response to ECM-driven signals, which is expected to help comprehensive understanding of EMT progression.

    DOI

  • Trends in biomaterials in Japan

    Jun Nakanishi, Mitsuhiro Ebara

    Science and Technology of Advanced Materials   22 ( 1 ) 808  2021

    Rapid communication, short report, research note, etc. (scientific journal)  

    DOI

  • 上皮間葉転換(EMT)誘導細胞に対する選択的細胞毒性作用を有するnanaomycin Kに関する研究

    松尾 洋孝, 中西 淳, 野口 吉彦, 砂塚 敏明, 高橋 洋子, 大村 智, 中島 琢自

    日本放線菌学会大会講演要旨集   34回   92 - 92  2019.09

    J-GLOBAL

  • "Streptomyces rosa subsp.notoensis"OS-3966株が生産する新規nanaomycin類縁体に関する研究

    松尾 洋孝, 宮野 怜, 野口 吉彦, 武 晃, 中西 淳, 重村 克己, 廣瀬 友靖, 砂塚 敏明, 高橋 洋子, 大村 智, 中島 琢自

    日本放線菌学会大会講演要旨集   33回   133 - 133  2018.09

    J-GLOBAL

  • Are non-biocompatible materials useless?

    NAKANISHI Jun

      28 ( 3 ) 191 - 192  2010.07

    CiNii

  • Fabrication Process of Micro-patterns on Caged Cell-Culturing Substrates

    CHOI Wonjun, YAGI Tohru, NAKANISHI Jun, YAMAGUCHI Kazuo, YOKOTA Hideo, SUGAWARA Michiko

      2010 ( 25 ) 27 - 31  2010.03

    CiNii

  • ケージド細胞培養基板を用いる細胞アレイ作製 (特集 細胞アレイ)

    宝田 徹, 前田 瑞夫, 中西 淳

    バイオインダストリー   23 ( 1 ) 6 - 11  2006.01

    CiNii

  • 異なる種類の細胞を望みの位置に配置する ケージド細胞培養基板技術

    中西淳, 前田瑞夫

    バイオニクス   2 ( 5 ) 60 - 61  2005.05

    J-GLOBAL

  • Technology to Control a Scaffold of Cells.

    中西淳, 前田瑞夫

    化学   60 ( 1 ) 68 - 69  2005.01

    J-GLOBAL

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Industrial Property Rights

  • 蛍光顕微鏡下における細胞接着の光スイッチング法

    Patent

     View Summary

    特願2004-188461

  • 蛍光顕微鏡下における細胞接着の光スイッチング法

    Patent

     View Summary

    特願2004-188461

 

Syllabus

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Research Institute

  • 2022
    -
    2024

    Waseda Research Institute for Science and Engineering   Concurrent Researcher